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. 2008 Dec 23;37(3):939–944. doi: 10.1093/nar/gkn1019

Figure 4.

Figure 4.

Dependence of optimal pseudocounts on average entropy. (A) Optimal pseudocounts using matrix-based ED. The correlation coefficient is 0.93, the correlation P-value is less than 2.2 × 10–16, and the R2 value is 0.95. (B) Optimal pseudocounts using sequence-based ED. The correlation coefficient is 0.93, the correlation P-value is less than 2.2 × 10–16 and the R2 value is 0.85.