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. 2009 Jan 7;37(3):e20. doi: 10.1093/nar/gkn1024

Table 1.

The hairpin fluorescence probe and oligonucleotides

Name Sequence (5′ to 3′)
Hairpin fluorescence probe FAM-TCTTGGACACA GTAAAGAGAGGTGCGCCCAT TGTGTCCAAGA-DABCYL
Target ATGGGCGCACCTCTCTTTACTGTGTC TTT
Random DNA TGCAAGGTGTCAGTATAATCCGACGT TTT
Primer TCTTGGAC

The italicized region of the hairpin fluorescence probe identifies the stem sequence and the underlined region identifies the complementary sequence to the primer.