Table 2.
Results obtained by various haplotyping software on the experimentally determined ApoE dataset.
| ApoE | 0%MD | 5%MD | |||
| IER | IF | IER | MER | IF | |
| 2snp | 20.0 | 83.8 | 22.7 | 7.3 | 83.9 |
| Fastphase | 11.3 | 89.4 | 17.4 | 6.1 | 87.5 |
| Gerbil | 20.0 | 81.3 | 20.3 | 6.6 | 84.6 |
| Ishape | 5.6 | 94.1 | 10.2 | 5.9 | 92.5 |
| Shape-IT | 5.6 | 94.1 | 10.5 | 6.2 | 92.4 |
| Phase v2.1 | 5.8 | 94.0 | 10.2 | 5.8 | 92.4 |
| PLEM | 12.5 | 89.8 | 16.0 | 6.5 | 88.7 |
For the various software tested, we measured the percentage of individuals incorrectly reconstructed (IER), the percentage of missing data incorrectly inferred (MER), and the distance between real and inferred haplotype frequencies (IF) on the ApoE with complete genotypes and 5% random missing genotypes.