TABLE 2.
Genetic sequencing of PVs (n = 252), isolated from wastewater samples, by surveillance site and study period
Site | No. of isolates for which data are available | No. of strains with mutations (%) | Among strains with mutation
|
No. of isolates with intertype recombination (%)
|
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---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Median no. of mutations per strain (range) | No. of strains with ≥5 mutations (%) | Median % divergence from Sabin strain (range) | Median no. of transversions (range) | Median ratio of no. of transversions/total no. of mutations (range) | Median no. of silent mutations (range) | Median ratio of no. of silent mutations/total no. of mutations (range) | Total | S1/S2 | S1/S3 | S2/S1 | S2/S3 | S3/S1 | S3/S2 | |||
All sites and periods combined | 252 | 194 (77) | 2 (1, 7) | 6 (3) | 0.22 (0.11, 0.77) | 0 (0, 3) | 0 (0, 1) | 1 (0, 3) | 0.50 (0, 1) | 50 (20) | 2 (4) | 1 (2) | 3 (6) | 4 (8) | 10 (20) | 30 (60) |
Córdoba City | ||||||||||||||||
Initial IPV period (May-10 August 2005) | 5 | 4 (80) | 2 (1, 5) | 1 (25) | 0.22 (0.11, 0.56) | 0 (0, 0) | 0 (0, 0) | 1 (0, 2) | 0.35 (0, 1) | 1 (20) | 0 | 0 | 0 | 0 | 0 | 1 (100) |
From first OPV reintroduction (11 August 2005-April 2006) | 129 | 104 (81) | 2 (1, 5) | 1 (1) | 0.22 (0.11, 0.55) | 0 (0, 3) | 0 (0, 1) | 1 (0, 3) | 0.50 (0, 1) | 26 (20) | 2 (8) | 0 | 0 | 2 (8) | 3 (12) | 19 (73) |
Rio Cuarto | 37 | 30 (81) | 2 (1, 7) | 2 (7) | 0.22 (0.11, 0.77) | 0 (0, 2) | 0 (0, 1) | 1 (0, 3) | 0.50 (0, 1) | 7 (19) | 0 | 0 | 1 (14) | 0 | 3 (43) | 3 (43) |
Villa Maria | 39 | 29 (74) | 2 (1, 5) | 1 (3) | 0.11 (0.11, 0.56) | 0 (0, 1) | 0 (0, 1) | 1 (0, 3) | 0.20 (0, 1) | 9 (23) | 0 | 0 | 2 (22) | 0 | 3 (33) | 4 (44) |
San Francisco | 42 | 27 (64) | 2 (1, 7) | 1 (4) | 0.22 (0.11, 0.77) | 0 (0, 1) | 0 (0, 1) | 1 (0, 3) | 0.29 (0, 1) | 7 (17) | 0 | 1 (14) | 0 | 2 (29) | 1 (14) | 3 (43) |