Skip to main content
. 2008 Dec 12;191(5):1574–1580. doi: 10.1128/JB.01471-08

TABLE 1.

Primers

Analysis Primer Sequence Locationa
Confirming that pUT1951 and 686 CTCCCGTATCGTAGTTATC Internal to Ampr gene
    pUT1945 are inserted into the chromosome (Fig. 3) 733 ACATACCCGACACATTG c bp 1306725-1306741 Erwinia chromosome
Identifying plasmids formed 357 GGAAATGTTGAATACTCATACTCTTC Internal to Ampr gene
    in donors when replication proteins are supplied 718 GCGGCCGCAATTGAGCAGAGGTTCGCAGCC c bp 1309304-1309320 Pectobacterium chromosome
Mapping Kanr DNA after transfer from JW2128 and 791 CGCCAATCGGCACAAACAATAG c bp 2228862-2228883 MG1655 chromosome
    JW2161 792 CAGTCATAGCCGAATAGCCT Internal to Kanr gene, JW2128 and JW2161
804 GCAGGCTGGATGCGTTAC c bp 2265473-2265490 MG1655 chromosome
Cloning cryptic E. coli oriT 787 GGCCGGATCGATCGGCAACGCGACCGGT c bp 2225942-2225957 MG1655 chromosome
789 GGCCGGCAATTGAGCAGCTCAACGATGTCGCG c bp 2226029-2226048 MG1655 chromosome
Replacement of cryptic oriT in E. coli with Camr FRT 795 CTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGACTTTGTCGTGTAGGCTGGAGCTGCTTC Amplification of Camr DNA (reverse)
    fragment 796 AGCTCAACGATGTCGCGGGGAAAATGAAAATTATTGAGGCACGGTTAAATGGGAATTAGCCATGGTCC Amplification of Camr DNA (forward)
a

c, complement to the indicated base pairs. Ampr, ampicillin resistance.