TABLE 1.
Primers
Analysis | Primer | Sequence | Locationa |
---|---|---|---|
Confirming that pUT1951 and | 686 | CTCCCGTATCGTAGTTATC | Internal to Ampr gene |
pUT1945 are inserted into the chromosome (Fig. 3) | 733 | ACATACCCGACACATTG | c bp 1306725-1306741 Erwinia chromosome |
Identifying plasmids formed | 357 | GGAAATGTTGAATACTCATACTCTTC | Internal to Ampr gene |
in donors when replication proteins are supplied | 718 | GCGGCCGCAATTGAGCAGAGGTTCGCAGCC | c bp 1309304-1309320 Pectobacterium chromosome |
Mapping Kanr DNA after transfer from JW2128 and | 791 | CGCCAATCGGCACAAACAATAG | c bp 2228862-2228883 MG1655 chromosome |
JW2161 | 792 | CAGTCATAGCCGAATAGCCT | Internal to Kanr gene, JW2128 and JW2161 |
804 | GCAGGCTGGATGCGTTAC | c bp 2265473-2265490 MG1655 chromosome | |
Cloning cryptic E. coli oriT | 787 | GGCCGGATCGATCGGCAACGCGACCGGT | c bp 2225942-2225957 MG1655 chromosome |
789 | GGCCGGCAATTGAGCAGCTCAACGATGTCGCG | c bp 2226029-2226048 MG1655 chromosome | |
Replacement of cryptic oriT in E. coli with Camr FRT | 795 | CTTGCCACTTTCGGCAACGCGACCGGTTTAAGCTTCAATGACTTTGTCGTGTAGGCTGGAGCTGCTTC | Amplification of Camr DNA (reverse) |
fragment | 796 | AGCTCAACGATGTCGCGGGGAAAATGAAAATTATTGAGGCACGGTTAAATGGGAATTAGCCATGGTCC | Amplification of Camr DNA (forward) |
c, complement to the indicated base pairs. Ampr, ampicillin resistance.