TABLE 2.
Detailed information on the samples used in this study including hantavirus species, source of the viral RNA (human or rodent), location, map number, allele letters in Fig. 1 and 2, and GenBank accession numbers
| Hantavirus species | Source (human, rodent species) | Code or museum no. | Site | Administrative region in Chile | Country | Map no. | S-segment allele letters in Fig. 1 | Virus sequence abbreviation in Table 4 | GenBank accession number for:
|
||
|---|---|---|---|---|---|---|---|---|---|---|---|
| S segment | Glycoprotein Gn | Glycoprotein Gc | |||||||||
| Samples from this study | |||||||||||
| Andes | Oligoryzomys longicaudatus | NK 96865 | Fray Jorge | Coquimbo | Chile | 1 | MA | FJ865 | EU241689 | EU241637 | EU241651 |
| Andes | Oligoryzomys longicaudatus | NK 96887 | Fray Jorge | Coquimbo | Chile | 1 | MB | FJ887 | EU241690 | EU241638 | EU241652 |
| Andes | Oligoryzomys longicaudatus | NK 108859 | Los Vilos | Coquimbo | Chile | 2 | MC | EU241665 | |||
| Andes | Oligoryzomys longicaudatus | NK 104619 | San Carlos de Apoquindo | Metropolitana | Chile | 3 | MD | SCA619 | EU241691 | EU241639 | EU241653 |
| Andes | Oligoryzomys longicaudatus | NK 105110 | San Carlos de Apoquindo | Metropolitana | Chile | 3 | MD | SCA110 | EU241667 | ||
| Andes | Oligoryzomys longicaudatus | NK 96325 | San Carlos de Apoquindo | Metropolitana | Chile | 3 | MD | SCA325 | EU241666 | ||
| Andes | Human | AND1134S | Lo Herrera | Metropolitana | Chile | 4 | MG | EU241669 | |||
| Andes | Human | AND1133S | Peñaflor | Metropolitana | Chile | 5 | MF | EU241668 | |||
| Andes | Rattus rattus | Rr55 | Melipilla | Metropolitana | Chile | 6 | MH | EU241670 | |||
| Andes | Oligoryzomys longicaudatus | OL60S | Quebrada de la Plata | Metropolitana | Chile | 7 | MI | EU241671 | |||
| Andes | Oligoryzomys longicaudatus | OL269S | Picarquin | O'Higgins | Chile | 8 | ML | EU241674 | |||
| Andes | Oligoryzomys longicaudatus | NK 105929 | San Fernando | O'Higgins | Chile | 9 | MK | EU241673 | |||
| Andes | Human | HNancagua | Nancahua | O'Higgins | Chile | 10 | MJ | EU241672 | |||
| Andes | Oligoryzomys longicaudatus | NK 120092 | Curicó | Maule | Chile | 11 | MN | CUR092 | EU241692 | EU241640 | |
| Andes | Oligoryzomys longicaudatus | NK 108501 | Duao | Maule | Chile | 12 | MO | EU241675 | |||
| Andes | Oligoryzomys longicaudatus | NK 108505 | Duao | Maule | Chile | 12 | MO | EU241676 | |||
| Andes | Oligoryzomys longicaudatus | NK 108843 | Los Ruiles | Maule | Chile | 13 | MM | LR843 | EU241693 | EU241641 | EU241655 |
| Andes | Human | HPWS | Chillán | Concepción | Chile | 14 | TB | EU241678 | |||
| Andes | Human | HChillanS | Chillán | Concepción | Chile | 14 | TA | EU241677 | |||
| Andes | Oligoryzomys longicaudatus | NK 120076 | Tomé | Concepción | Chile | 15 | TC | EU241680 | |||
| Andes | Human | H792 | Concepción | Concepción | Chile | 16 | TA | EU241679 | |||
| Andes | Oligoryzomys longicaudatus | NK 105979 | Tucapel | Concepción | Chile | 17 | TD | TUC979 | EU241694 | EU241642 | EU241656 |
| Andes | Oligoryzomys longicaudatus | OL25S | Quilleco | Concepción | Chile | 18 | TE | EU241681 | |||
| Andes | Oligoryzomys longicaudatus | OL26S | Quilleco | Concepción | Chile | 18 | TF | EU241682 | |||
| Andes | Oligoryzomys longicaudatus | NK 96703 | Temuco | Temuco | Chile | 19 | TG | TEM703 | EU241697 | EU241643 | EU241657 |
| Andes | Oligoryzomys longicaudatus | NK 105362 | Parque Nacional Huerquehue | Temuco | Chile | 20 | TI | PNH362 | EU241695 | EU241645 | EU241659 |
| Andes | Oligoryzomys longicaudatus | NK 95083 | Parque Nacional Villarrica | Temuco | Chile | 21 | TJ | PNV083 | EU241696 | EU241644 | EU241658 |
| Andes | Oligoryzomys longicaudatus | NK 95613 | Carahue | Temuco | Chile | 22 | TH | EU241683 | |||
| Andes | Oligoryzomys longicaudatus | NK 104535 | Panguipulli | Los Ríos | Chile | 23 | TK | PAN535 | EU241698 | EU241646 | EU241660 |
| Andes | Oligoryzomys longicaudatus | NK 104544 | Panguipulli | Los Ríos | Chile | 23 | TI | PAN544 | EU241699 | EU241647 | EU241661 |
| Andes | Abrothrix longipilis | AL16 | Neltume | Los Ríos | Chile | 24 | TL | EU241684 | |||
| Andes | Oligoryzomys longicaudatus | NK 96555 | Reserva Nacional Río Simpson | Aysén | Chile | 25 | TQ | RNRS555 | EU241700 | EU241648 | EU241662 |
| Andes | Oligoryzomys longicaudatus | NK 96566 | Reserva Nacional Río Simpson | Aysén | Chile | 25 | TR | RNRS566 | EU241701 | EU241649 | EU241663 |
| Andes | Oligoryzomys longicaudatus | OL178S | Coyhaique | Aysén | Chile | 26 | TS | EU241686 | |||
| Andes | Abrothrix longipilis | AL218 | Coyhaique | Aysén | Chile | 26 | TS | EU241687 | |||
| Andes | Loxodontomys micropus | LM859 | Coyhaique | Aysén | Chile | 26 | TT | EU241688 | |||
| Andes | Oligoryzomys longicaudatus | NK 120378 | Chile Chico | Aysén | Chile | 27 | TO | CHC378 | EU241702 | EU241650 | EU241664 |
| Andes | Oligoryzomys longicaudatus | NK 120387 | Chile Chico | Aysén | Chile | 27 | TP | CHC387 | EU241685 | ||
| GenBank samples | |||||||||||
| Andes | Human | CHI-7913 | Los Angeles | Bío Bío | Chile | 28 | TM | CHI-7913 | AY228237 | AY228238 | AY228238 |
| Andes | Human | AH-1 | El Bolsón | Argentina | 29 | TN | AH-1 | AF324902 | AF324901 | AF324901 | |
| Andes | Human | CH H-1/96 | Chiloé | Los Lagos | Chile | 30 | TN | AF004660 | |||
| Andes | Oligoryzomys longicaudatus | AND123 | Aysén | Aysén | Chile | 31 | TU | AND123 | AF291702 | AF291703 | AF291703 |
| Andes | Oligoryzomys longicaudatus | AND58 | Aysén | Aysén | Chile | 31 | TV | AND58 | AF482712 | ||
| Andesa | Human | Hu39694 | Argentina | Hu39694 | AF482711 | AF028023 | AF028023 | ||||
| Andes Central Bs. Airesa | Oligoryzomys flavescens | Central Buenos Aires | Argentina | AF389484 | AF389482 | ||||||
| Andes Central Plataa | Oligoryzomys flavescens | Central Plata | Uruguay | AF389485 | EU564721 | ||||||
| Lechiguanasa | Argentina | LEC | AF482714 | AF028022 | AF028022 | ||||||
| Orána | Argentina | ORN | AF325966 | AF028024 | AF028024 | ||||||
| Maciel | Argentina | AF482716 | |||||||||
| Pergamino | Argentina | AF482717 | |||||||||
| Bermejo | Argentina | AF482713 | |||||||||
| Laguna Negra | Paraguay | LN | AF005727 | AF005728 | AF005728 | ||||||
| Itapua | Paraguay | DQ345766 | |||||||||
| Choclo | Panamá | DQ285046 | |||||||||
| Rió Marmoré | Perú | AF133254 | |||||||||
| Rió Mamoré | Bolivia | U52136 | |||||||||
| Araraquara | Brazil | AF307325 | |||||||||
| Caño Delgadito | Venezuela | AF000140 | |||||||||
| Sin Nombre | United States | NC_005216 | |||||||||
a
Samples corresponding to previously reported ANDV lineages other than ANDV Sout: Andes Central Bs. Aires and Hu39694 correspond to ANDV Cent Bs.As., Andes Central Plata corresponds to ANDV Cent Plata, Lechiguanas corresponds to ANDV Cent Lec., and Oran corresponds to ANDV Nort.