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. 2009 Jan 30;10(Suppl 1):S17. doi: 10.1186/1471-2105-10-S1-S17

Table 5.

Relative speedup comparison.

Speedup EMBF EMBF-3# SW BLAT SOAP
EMBF 1 1/1.57 48838 42.66 1/3.1

EMBF-3# 1 76734 67.02 1/1.97

SW 1 1/1145 1/151385

BLAT 1 1/132.3

SOAP 1

The value indicates the speedup when comparing row algorithm with column algorithm. A value n > 1 means that the row algorithm performs n times fast than column algorithm. All data were collected from average performance of 10 K anchor requests.