Table 5.
Relative speedup comparison.
| Speedup | EMBF | EMBF-3# | SW | BLAT | SOAP | 
| EMBF | 1 | 1/1.57 | 48838 | 42.66 | 1/3.1 | 
| EMBF-3# | 1 | 76734 | 67.02 | 1/1.97 | |
| SW | 1 | 1/1145 | 1/151385 | ||
| BLAT | 1 | 1/132.3 | |||
| SOAP | 1 | ||||
The value indicates the speedup when comparing row algorithm with column algorithm. A value n > 1 means that the row algorithm performs n times fast than column algorithm. All data were collected from average performance of 10 K anchor requests.