Table 3.
A prediction performance comparison to show the effectiveness of incorporating neighbourhood information
| No NI(*) | NI(*) | |
| Prediction coverage (%) | 60 | 84 |
| Measure-I (k = 3) (%) | 86.14 | 87.50 |
| Measure-II (%) | 63.52 | 67.76 |
| Mitochondrion | 35.12 | 57.85 |
| Vacuole | 31.58 | 15.30 |
| Spindle pole | 38.89 | 60.00 |
| Cell periphery | 34.92 | 30.34 |
| Punctate composite | 19.67 | 16.50 |
| Vacuolar membrane | 8.11 | 22.73 |
| ER | 53.02 | 51.89 |
| Nuclear periphery | 50.00 | 48.98 |
| Endosome | 40.74 | 44.12 |
| Bud neck | 36.11 | 52.73 |
| Microtubule | 45.46 | 31.58 |
| Golgi | 23.81 | 42.86 |
| Late Golgi | 21.74 | 29.03 |
| Peroxisome | 33.33 | 65.00 |
| Actin | 52.94 | 58.62 |
| Nucleolus | 32.91 | 58.62 |
| Cytoplasm | 79.88 | 80.68 |
| ER to Golgi | 100.00 | 66.67 |
| Early Golgi | 26.67 | 48.87 |
| Lipid particle | 9.09 | 6.67 |
| Nucleus | 77.91 | 80.59 |
| Bud | 7.69 | 23.81 |
| Measure-III (%) | 39.07 | 45.15 |
(*) Note: No NI: Prediction without incorporating neighbourhood information; NI: Prediction with neighbourhood information.