Table 4.

Disease names and their top 10 significant phenotype hits, the rows in bold are diseases of interest.

Rank	id	Score	Disease Name
Crohn's disease and its phenotype hits.
1	266600	1.0000	inflammatory bowel disease 1
2	191390	0.6624	ulcerative colitis
3	605225	0.6402	inflammatory bowel disease 7
4	180300	0.4314	rheumatoid arthritis
5	177900	0.4256	soriasis susceptibility
6	301000	0.4220	wiskott-aldrich syndrome
7	222100	0.4065	diabetes mellitus, insulin-dependent
8	249100	0.4054	familial mediterranean fever
9	232220	0.4048	glycogen storage disease ib
10	219700	0.4043	cystic fibrosis
rheumatoid arthritis and its phenotype hits.
1	180300	1.0000	rheumatoid arthritis
2	180350	0.4476	rheumatoid nodulosis
3	266600	0.4314	inflammatory bowel disease 1
4	222100	0.4117	diabetes mellitus
5	106300	0.3881	ankylosing spondylitis
6	191390	0.3861	ulcerative colitis
7	606044	0.3816	sjogren syndrome
8	254500	0.3736	myeloma, multiple
9	109100	0.3681	autoimmune disease
10	300310	0.3665	agammaglobulinemia
type 1 diabetes and its phenotype hits.
1	125480	1.0000	diabetes mellitus
2	275000	0.4704	graves disease
3	601318	0.4478	diabetes mellitus
4	270150	0.4458	sjogren syndrome
5	600496	0.4415	maturity-onset diabetes of the young
6	217000	0.4141	complement component 2 deficiency
7	180300	0.4117	rheumatoid arthritis
8	266600	0.4065	inflammatory bowel disease 1
9	137100	0.4049	immunoglobulin a defi1
10	125850	0.4042	maturity-onset diabetes