Table 3.

Detailed information of the novel ncRNA candidates in group I.

			Genome Location
Name	Chr.	Intergenic Region	Start	End	Strand	Len.
SEQ1	1	AT1G28750–AT1G28770	10091146	10091292	W	147
SEQ2	1	AT1G30972–AT1G30974	11046502	11046670	W	169
SEQ3‡	1	AT1G43620–AT1G43630	16433517	16433593	W	77
SEQ4	1	AT1G54890–AT1G54905	20470604	20470753	C	150
SEQ5a†	2	AT2G01020–AT2G01022	6084	6646	C	563
SEQ6a†	2	AT2G01020–AT2G01022	6708	7257	C	550
SEQ7a#,†	2	AT2G01020–AT2G01022	7288	8699	C	1412
SEQ8a†	2	AT2G01020–AT2G01022	8889	9367	C	479
SEQ9W	2	AT2G07590–AT2G07600	3187035	3187217	W	183
SEQ9C*,#	2	AT2G07590–AT2G07600	3187035	3187217	C	183
SEQ10W	2	AT2G07689–AT2G07691	3338151	3338560	W	410
SEQ10C	2	AT2G07689–AT2G07691	3338151	3338560	C	410
SEQ11C	2	AT2G07732–AT2G07733	3469569	3469970	C	402
SEQ11W*	2	AT2G07732–AT2G07733	3469611	3470020	W	410
SEQ12W	2	AT2G09880–AT2G09890	3747858	3748031	W	174
SEQ12C*,‡	2	AT2G09880–AT2G09890	3747858	3748031	C	174
SEQ13‡	2	AT2G12420–AT2G12430	5036416	5036560	C	145
SEQ5b†	3	AT3G41979–AT3G42050	14211041	14211603	C	563
SEQ6b†	3	AT3G41979–AT3G42050	14211665	14212214	C	550
SEQ7b#,†	3	AT3G41979–AT3G42050	14212350	14213656	C	1307
SEQ8b†	3	AT3G41979–AT3G42050	14213846	14214324	C	479
SEQ14♭	3	AT3G42803–AT3G42806	14923566	14923707	W	142
SEQ15	5	AT5G09960–AT5G09970	3111082	3111016	W	67
SEQ16	5	AT5G29805–AT5G29890	11327943	11328007	W	65
SEQ17	5	AT5G32410–AT5G32420	12042758	12042828	C	71
SEQ18a	5	AT5G34358–AT5G34376	12842957	12843077	W	121
SEQ18b	5	AT5G34412–AT5G34431	12885676	12885796	W	121

The three sequences marked by * are not expressed in the bi-directional RT-PCR analysis of the inflorescence tissue. The three sequences marked by # may code for proteins. The sequences marked by † were annotated as LSU-rRNA Ath by RepeatMasker. The sequences marked by ‡ were annotated as LTR by RepeatMasker. The sequences marked by ♭ were annotated as DNA transposons by RepeatMasker.