Table 7.
List of abbreviations used in this study.
| Concept Abbreviation | |||
| COBRA | Constraint-based reconstruction and analysis | EM | Elementary flux mode |
| CoSet | Correlated reaction set | RBC | Human Red Blood Cell |
| ExPa | Extreme pathway | ||
| Metabolite Abbreviation | |||
| AKG | Alpha ketoglutarate | MAL | Malate |
| GLC | Glucose | G6P | Glucose-6-phosphate |
| F6P | Fructose-6-phosphate | FDP | Fructose-1,6-phosphate |
| DHAP | Dihydroxyacetone phosphate | GA3P | Glyceraldehyde-3-phosphate |
| 13DPG | 1,3-Diphosphoglycerate | 23DPG | 2,3-Diphosphoglycerate |
| 3PG | 3-Phosphoglycerate | 2PG | 2-Phosphoglycerate |
| PEP | Phosphoenolpyruvate | PYR | Pyruvate |
| LAC | Lactate | 6PGL | 6-Phosphogluco-lactone |
| 6PGC | 6-Phosphogluconate | RL5P | Ribulose-5-phosphate |
| X5P | Xylulose-5-phosphate | R5P | Ribose-5-phosphate |
| S7P | Sedoheptulose-7-phosphate | E4P | Erythrose-4-phosphate |
| PRPP | 5-Phosphoribosyl-1-pyrophosphate | IMP | Inosine monophosphate |
| R1P | Ribose-1-phosphate | HX | Hypoxanthine |
| INO | Inosine | ADE | Adenine |
| ADO | Adenosine | AMP | Adenosine monophosphate |
| ADP | Adenosine diphosphate | ATP | Adenosine triphosphate |
| NAD | Nicotinamide adenine dinucleotide | H | Hydrogen Ion |
| NADH | Nicotinamide adenine dinucleotide(R) | NH3 | Ammonia |
| NADP | Nicotinamide adenine dinucleotide phosphate | Pi | Inorganic Phosphate |
| NADPH | Nicotinamide adenine dinucleotide phosphate(R) | CO2 | Carbon Dioxide |
| H2O | Water | ||
| Pathway/Reaction Abbreviation | |||
| EMP | Embden-Meyerhof-Parnas pathway | PPP | Pentose Phosphate Pathway |
| 34HPPt2m | 3 4 hydroxyphenyl pyruvate mitochondrial transport via proton symport | ACKr | acetate kinase |
| ACOTAim | acteylornithine transaminase irreversible mitochondrial | ACONT | aconitase |
| ACt2r | acetate reversible transport via proton symport | ABTA | 4 aminobutyrate transaminase |
| AGPRim | N acetyl g glutamyl phosphate reductase irreversible mitochondrial | ACSm | acetyl CoA synthetase |
| AKGDbm | oxoglutarate dehydrogenase dihydrolipoamide S succinyltransferase | ADHEr | Acetaldehyde dehydrogenase |
| ACGKm | acetylglutamate kinase mitochondrial | ALD | Aldolase |
| AKGDam | oxoglutarate dehydrogenase lipoamide | ADK1m | adenylate kinase mitochondrial |
| AdPRT | Adenine phosphoribosyl transferase | ADK1 | adenylate kinase |
| AKGMAL | alpha ketoglutaratemalate transporter | AKGDH | 2 Oxogluterate dehydrogenase |
| AKGt2r | 2 oxoglutarate reversible transport via symport | ARGSL | argininosuccinate lyase |
| ARGSSr | argininosuccinate synthase reversible | ACLSm | acetolactate synthase mitochondrial |
| CYOR_u6m | ubiquinol 6 cytochrome c reductase | CS | citrate synthase |
| CYOOm | cytochrome c oxidase mitochondrial | CO2t | CO2 transporter via diffusion |
| CYTBD | cytochrome oxidase bd ubiquinol 8 2 protons | CYTK2 | cytidylate kinase dCMP |
| D_LACt2 | D lactate transport via proton symport | DCTPD | dCTP deaminase |
| DHAD1m | dihydroxy acid dehydratase 2 3 dihydroxy 3 methylbutanoate mitochondrial | EN | Enolase |
| ETOHt2r | ethanol reversible transport via proton symport | ENO | enolase |
| EX_ac(e) | Acetate exchange | EX_ADE | ADE exchange |
| EX_akg(e) | 2 Oxoglutarate exchange | EX_co2(e) | CO2 exchange |
| EX_etoh(e) | Ethanol exchange | EX_for(e) | Formate exchange |
| EX_fum(e) | Fumarate exchange | EX_glc(e) | D Glucose exchange |
| EX_h2o(e) | H2O exchange | EX_LAC | LAC exchange |
| EX_lac_D(e) | D lactate exchange | EX_NAD | NAD exchange |
| EX_NADH | NADH exchange | EX_NADP | NADP exchange |
| EX_NADPH | NADPH exchange | EX_pyr(e) | Pyruvate exchange |
| FBA | fructose bisphosphate aldolase | EX_o2(e) | O2 exchange |
| FORt | formate transport via diffusion | G6PDH2r | glucose 6 phosphate dehydrogenase |
| GCCam | glycine cleavage complex lipoylprotein mitochondrial | GND | phosphogluconate dehydrogenase |
| GCCcm | glycine cleavage complex lipoylprotein mitochondrial | GLCpts | D glucose transport via PEPPyr PTS |
| GCCbim | glycine cleavage complex lipoylprotein irreversible mitochondrial | GLUDC | Glutamate Decarboxylase |
| GAPD | glyceraldehyde 3 phosphate dehydrogenase | HETZK | hydroxyethylthiazole kinase |
| GAPDH | Glyceraldehyde phosphate dehydrogenase | H2Ot | H2O transport via diffusion |
| HMPK1 | hydroxymethylpyrimidine kinase ATP | ICL | Isocitrate lyase |
| KARA1im | acetohydroxy acid isomeroreductase mitochondrial | LDH | Lactate dehydrogenase |
| NDPK7 | nucleoside diphosphate kinase ATPdCDP | MALS | malate synthase |
| MALt2r | L malate reversible transport via proton symport | LDH_D | D lactate dehydrogenase |
| O2t | o2 transport diffusion | O2tm | O2 transport diffusion |
| OCBTi | ornithine carbamoyltransferase irreversible | PFK | Phosphofructokinase |
| ORNTACim | ornithine transacetylase irreversible mitochondrial | PGM | Phosphoglyceromutase |
| ORNt3m | ornithine mitochondrial transport via proton antiport | PFL | pyruvate formate lyase |
| PGCD | phosphoglycerate dehydrogenase | PGI | Phosphoglucoisomerase |
| PGK | phosphoglycerate kinase | PGL | 6 phosphogluconolactonase |
| PGL | 6-phosphoglyconolactonase | PGM | phosphoglycerate mutase |
| PDGH | 6-phosphoglycononate dehydrogenase | PMPK | phosphomethylpyrimidine kinase |
| PGPPAm_SC | phosphatidylglycerol phosphate phosphatase A yeast specific mitochondrial | PK | Pyruvate kinase |
| PNPase | Purine nucleoside phosphorylase | PPS | phosphoenolpyruvate synthase |
| PRM | Phosphoribomutase | PSERT | phosphoserine transaminase |
| PSP_L | phosphoserine phosphatase L serine | PTAr | phosphotransacetylase |
| PYRt2r | pyruvate reversible transport via proton symport | R5PI | Ribose-5-phosphate isomerase |
| SSALy | succinate semialdehyde dehydrogenase NADP | SUCD4 | succinate dehyrdogenase |
| SUCOAS | succinyl CoA synthetase ADP forming | TA | Transaldolase |
| SUCOASm | Succinate CoA ligase ADP forming | TALA | transaldolase |
| TYRt2m | tyrosine mitochondrial transport via proton symport | TKII | Transketolase |
| TYRTAm | tyrosine transaminase mitochondrial | TKT1 | transketolase |
| TMPPP | thiamine phosphate diphosphorylase | TMN | thiaminase |
| TPI | Triose phosphate isomerase | TKI | Transketolase |
| Xu5PE | Xylulose-5-phosphate epimerase | ||
Abbreviations used in this study are divided into three parts. They are concept abbreviations, metabolite abbreviations and pathway/reaction abbreviations.