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. 2009 Mar 6;4(3):e4732. doi: 10.1371/journal.pone.0004732

Table 5. Oncogenes and tumor suppressors with cancer-specific AS events.

Gene ID Symbol Gene Description AS
Oncogenes
25 ABL1 v-abl Abelson murine leukemia viral oncogene homolog 1 1
3726 JUNB jun B proto-oncogene 2
7409 VAV1 vav 1 oncogene 1
6757 SSX2 synovial sarcoma, X breakpoint 2 3
2130 EWSR1 Ewing sarcoma breakpoint region 1 3
2241 FER fer (fps/fes related) tyrosine kinase (phosphoprotein NCP94) 2
369 ARAF v-raf murine sarcoma 3611 viral oncogene homolog 1
4613 MYCN v-myc myelocytomatosis viral related oncogene 2
2534 FYN FYN oncogene related to SRC, FGR, YES 2
727735 unassigned similar to TBC1 domain family member 3 1
51513 ETV7 ets variant gene 7 (TEL2 oncogene) 2
5894 RAF1 v-raf-1 murine leukemia viral oncogene homolog 1 2
4193 MDM2 Mdm2, transformed 3T3 cell double minute 2, p53 binding protein 1
4609 MYC v-myc myelocytomatosis viral oncogene homolog 1
2353 FOS v-fos FBJ murine osteosarcoma viral oncogene homolog 3
7410 VAV2 vav 2 oncogene 1
4194 MDM4 Mdm4, transformed 3T3 cell double minute 4, p53 binding protein 1
2118 ETV4 ets variant gene 4 (E1A enhancer binding protein, E1AF) 3
598 BCL2L1 BCL2-like 1 3
55885 LMO3 LIM domain only 3 (rhombotin-like 2) 1
3265 HRAS v-Ha-ras Harvey rat sarcoma viral oncogene homolog 2
4893 NRAS neuroblastoma RAS viral (v-ras) oncogene homolog 1
Total 39
Tumor suppressors
5934 RBL2 retinoblastoma-like 2 (p130) 1
3482 IGF2R insulin-like growth factor 2 receptor 1
5925 RB1 retinoblastoma 1 (including osteosarcoma) 1
54984 unassigned PIN2-interacting protein 1 1
4017 LOXL2 lysyl oxidase-like 2 3
29997 GLTSCR2 glioma tumor suppressor candidate region gene 2 3
2014 EMP3 epithelial membrane protein 3 1
672 BRCA1 breast cancer 1, early onset 2
54879 ST7L suppression of cancerigenicity 7 like 2
51147 ING4 inhibitor of growth family, member 4 1
7982 ST7 suppression of cancerigenicity 7 1
51566 ARMCX3 armadillo repeat containing, X-linked 3 4
84695 LOXL3 lysyl oxidase-like 3 2
79961 DENND2D DENN/MADD domain containing 2D 2
7157 TP53 cancer protein p53 (Li-Fraumeni syndrome) 1
7248 TSC1 tuberous sclerosis 1 1
54768 HYDIN hydrocephalus inducing homolog 3
581 BAX BCL2-associated X protein 1
1026 CDKN1A cyclin-dependent kinase inhibitor 1A (p21, Cip1) 5
1029 CDKN2A cyclin-dependent kinase inhibitor 2A 1
10263 CDK2AP2 CDK2-associated protein 2 1
Total 38