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. 2009 Jan 6;18(6):1171–1180. doi: 10.1093/hmg/ddp007

Table 1.

Results of allelic association for QC-checked SNPs in EAs, HAs, Korean and Japanese populations

Gene SNP Allele European-American
Hispanic-American
Korean
Japanese
MAF
MAF
MAF
MAF
Case Control P-value OR (95% CI) Case Control P-value OR (95% CI) Case Control P-value OR (95% CI) Case Control P-value OR (95% CI)
TRIM72 rs8056505 GA 0.3 0.32 0.16 0.9 (0.78–1.04) 0.42 0.39 0.33 1.11 (0.89–1.37) 0.17 0.19 0.19 0.88 (0.73–1.06) 0.16 0.17 0.93 0.47 (0.11,1.48)
ITGAM rs8057320 GA 0.29 0.31 0.14 0.89 (0.77–1.03) 0.39 0.37 0.64 1.05 (0.84–1.3) 0.18 0.20 0.14 0.87 (0.72–1.04) 0.17 0.18 0.68 0.93 (0.66–1.29)
ITGAM rs7193943 GA 0.28 0.30 0.16 0.9 (0.77–1.04) 0.36 0.30 0.37 1.1 (0.88–1.37) 0.18 0.20 0.14 0.87 (0.72–1.04) 0.16 0.18 0.61 0.918 (0.65–1.27)
ITGAM rs11865830 GA 0.28 0.31 0.17 0.9 (0.78–1.04) 0.37 0.36 0.77 1.03 (0.83–1.28) 0.18 0.20 0.13 0.86 (0.72–1.04) 0.17 0.18 0.52 1.07 (0.72–1.61)
ITGAM rs1143679 AG 0.18 0.11 1.04 × 10−8 1.73 (1.43–2.10) 0.16 0.09 2.85 × 10−5 2.09 (1.47–2.98) 0 0 0 0
ITGAM rs8048583 AG 0.3 0.32 0.16 0.9 (0.78–1.04) 0.41 0.41 0.86 1.01 (0.82–1.26) 0.19 0.22 0.06 0.84 (0.7–1.01) 0.17 0.19 0.54 1.11 (0.79–1.54)
ITGAM rs9936831 TA 0.18 0.12 1.41 × 10−7 1.63 (1.35–1.96) 0.19 0.11 0.0001 1.81 (1.32–2.47) 0 0
ITGAM rs11861251 GA 0.13 0.14 0.52 0.93 (0.77–1.13) 0.07 0.07 0.82 0.95 (0.63–1.42) 0 0
ITGAM rs9888879 GA 0.19 0.12 6.92 × 10−8 1.64 (1.36–1.96) 0.21 0.15 0.001 1.57 (1.18–2.09) 0 0
ITGAM rs12928810 AG 0.19 0.12 6.92 × 10−8 1.64 (1.36–1.96) 0.15 0.11 0.02 1.44 (1.04–1.99) 0 0
ITGAM rs9888739 AG 0.19 0.12 3.90 × 10−8 1.65 (1.38–1.98) 0.21 0.15 0.001 1.58 (1.18–2.1) 0 0
ITGAM rs7499077 AG 0.33 0.27 8.56 × 10−5 1.33 (1.15–1.54) 0.29 0.22 0.008 1.39 (1.08–1.77) 0 0
ITGAM rs11860650 AG 0.18 0.12 1.34 × 10−7 1.64 (1.36–1.97) 0.17 0.10 0.0001 1.91 (1.37–2.67) 0 0
ITGAM rs6565227 TA 0.19 0.12 8.76 × 10−8 1.63 (1.36–1.95) 0.21 0.15 0.001 1.57 (1.18–2.09) 0 0
ITGAM rs7206295 AG 0.29 0.31 0.11 0.88 (0.76–1.02) 0.40 0.39 0.72 1.04 (0.83–1.28) 0.19 0.22 0.042 0.82 (0.69–0.99) 0.16 0.18 0.51 1.11 (0.79–1.56)
ITGAM rs1143683 AG 0.22 0.15 7.98 × 10−7 1.52 (1.29–1.81) 0.19 0.12 0.0001 1.79 (1.31–2.43) 0 0
ITGAM rs1143678 AG 0.22 0.15 7.98 × 10−7 1.52 (1.29–1.81) 0.20 0.12 0.0004 1.71 (1.26–2.31) 0 0
ITGAM rs4597342 AG 0.29 0.31 0.15 0.9 (0.78–1.04) 0.40 0.39 0.85 1.02 (0.82–1.26) 0.19 0.23 0.045 0.83 (0.69–0.99) 0.17 0.18 0.65 1.08 (0.77–1.5)
Outer rs4506917 CA 0.47 0.51 0.01 0.83 (0.73–0.95) 0.35 0.42 0.01 0.75 (0.61–0.93) 0.21 0.24 0.09 0.86 (0.72–1.02)
Outer rs4075052 AC 0.29 0.31 0.14 0.89 (0.77–1.03) 0.40 0.40 0.92 1.01 (0.81–1.25) 0.21 0.24 0.07 0.85 (0.71–1.01)
Outer rs4261553 AG 0.29 0.31 0.16 0.90 (0.78–1.04) 0.40 0.40 0.94 1 (0.81–1.24) 0.21 0.24 0.07 0.85 (0.71–1.01) 0.18 0.26 0.68 0.68 (0.22–1.82)
Outer rs11150613 GA 0.30 0.32 0.21 0.91 (0.79–1.05) 0.40 0.40 0.96 1 (0.81–1.24) 0.21 0.24 0.09 0.85 (0.72–1.02)
ITGAX rs2230429 CG 0.31 0.34 0.05 0.87 (0.75–1) 0.28 0.35 0.004 0.72 (0.57–0.9) 0.21* 0.22 0.24 0.90 (0.75–1.08) 0.16 0.18 0.23 0.35 (0.07–1.25)
ITGAX rs9929832 GA 0.50 0.47 0.09 1.12 (0.98–1.28) 0.48* 0.49 0.61 0.94 (0.76–1.17) 0.23 0.22 0.37 1.08 (0.91–1.29) 0.16 0.17 0.96 1.05 (0.72–1.61)

MAF, minor allele frequency.

*Minor allele flipped.

Minor allele/major allele.