TABLE 1.
Data collection and refinement statistics
Oxidized E18D DJ-1 | Oxidized E18Q DJ-1 | |
---|---|---|
Data collection | ||
Space group | P3121 | P3121 |
Cell dimensions | ||
a = b, c (Å) | 74.75, 74.80 | 74.77, 74.79 |
Resolution (Å)a | 30-1.20 (1.24-1.20) | 30-1.15 (1.18-1.15) |
Rmergeb | 0.066 (0.640) | 0.092 (0.379) |
<I>/<σ(I)> | 32.0 (3.7) | 25.7 (6.9) |
Completeness (%) | 99.8 (100) | 99.8 (100) |
Redundancy | 9.9 (9.5) | 10.0 (9.8) |
Refinement | ||
Resolution (Å) | 30-1.20 | 30-1.15 |
No. of reflections | 75,731 | 85,756 |
Rwork; Rwork for Fo > 4σ(Fo) (%)c | 12.2; 11.0 | 11.6; 10.0 |
Rfree; Rfree for Fo > 4σ(Fo) (%)d | 15.5; 14.2 | 14.5; 13.6 |
Rall; Rall for Fo > 4σ(Fo) (%)e | 12.4; 11.1 | 11.6; 10.0 |
No. of atoms | ||
Protein | 1458 | 1439 |
Water | 261 | 288 |
Beq factors (Å2) | ||
Protein | 15.0 | 16.6 |
Water | 34.9 | 32.6 |
Root mean square deviations | ||
Bond lengths (Å) | 0.014 | 0.015 |
Bond angle 1-3 distances (Å) | 0.030 | 0.030 |
Values in parentheses are for the highest resolution shell.
Rmerge =
, where i is the
ith observation of a reflection with indices, h, k,
and l, and angle brackets indicate the average over all i
observations.
Rwork =
, where
is the calculated structure factor
amplitude with indices h, k, and l.
Rfree is calculated as Rwork, where
the values are taken from a test set
comprising 5% of the data that were excluded from the refinement
(25).
Rall is calculated as Rwork, where
the values include all measured data
(including the Rfree test set).