Table 2.
List and characteristics of the fungal genomes belonging to the subphyla Saccharomycotina and Taphrinomycotina archived in SNUGB.
| Speciesa | Size (Mb) | # of ORFs | # of Exons | Cb | Ib | Eb | Source | Refs |
| Fungi (Kingdom)e | ||||||||
| Ascomycota (Phylum) | ||||||||
| Saccharomycotina (Subphylum) | ||||||||
| Candida albicans SC5314 | 14.3 | 6,090 | 6,624 | N | Y | N | SGTC | [56,57] |
| Candida albicans WO-1 | 14.4 | 6,160 | 6,395 | N | Y | N | BI | N |
| Candida dubliniensisd | 14.5 | 6,027 | N | N | N | N | SI | N |
| Candida glabrata CBS138 | 12.3 | 5,165 | 5,249 | N | Y | N | CBS | [58] |
| A: Candida guilliermondii T: Pichia guilliermondii | 10.6 | 5,920 | 5,935 | N | Y | N | BI | N |
| Candida lusitaniae | 12.1 | 5,941 | 5,956 | N | Y | N | BI | N |
| Candida parapsilosis | 13.1 | 5,733 | 5,733 | N | Y | N | BI | N |
| Candida tropicalis | 14.7 | 6,258 | 6,292 | N | Y | N | BI | N |
| Candida tropicalisf | 2.1 | N | N | N | N | N | GS | [59] |
| Ashbya gossypii | 8.8 | 4,717 | 4,943 | 7 | Y | N | NCBI | [60] |
| Debaryomyces hansenii | 12.2 | 6,354 | 6,710 | 7 | Y | N | CBS | [58] |
| Debaryomyces hanseniif | 2.3 | N | N | N | N | N | GS | [61] |
| A: Candida sphaerica T: Kluyveromyces lactis | 10.7 | 5,327 | 5,457 | N | Y | N | GS | [58] |
| A: Candida sphaerica T: Kluyveromyces lactisf | 5.1 | N | N | N | N | N | GS | [62] |
| A: Candida kefyr T:Kluyveromyces marxianusf | 2.0 | N | N | N | N | N | GS | [63] |
| Kluyveromyces polysporus DSM70294 | 14.7 | 5,367 | 5,524 | N | Y | N | SIG | [64] |
| Kluyveromyces thermotoleransf | 2.2 | N | N | N | N | N | GS | [65] |
| Kluyveromyces waltii | 10.9 | 4,935 | 5,395 | N | Y | N | BI | [66] |
| Lodderomyces elongisporus | 15.5 | 5,802 | 5,856 | N | Y | N | BI | N |
| Saccharomyces bayanus MCYC 623 | 11.5 | 9,385 | 9,385 | N | Y | N | BI | [13] |
| Saccharomyces bayanus 623-6C YM4911 | 11.9 | 4,966 | 4,966 | N | Y | N | WGSC | [12] |
| Saccharomyces bayanus var. uvarumf | 4.5 | N | N | N | N | N | GS | [67] |
| Saccharomyces castellii | 11.4 | 4,677 | 4,677 | N | Y | N | WGSC | [12] |
| A: Candida robusta S288C T: Saccharomyces cerevisiae S288C | 12.2 | 6,692 | 7,042 | 16 | Y | N | SGD | [68] |
| A: Candida robusta RM11-1a T: Saccharomyces cerevisiae RM11-1a | 11.7 | 5,696 | 5,988 | N | Y | N | BI | N |
| A: Candida robusta YJM789 T: Saccharomyces cerevisiae YJM789 | 12.0 | 5,903 | 6,153 | N | Y | N | SI | [69] |
| Saccharomyces exiguusf | 2.0 | N | N | N | N | N | GS | [70] |
| Saccharomyces kluyveri | 11.0 | 2,968 | 2,968 | N | Y | N | WGSC | [12] |
| Saccharomyces kluyverif | 2.2 | N | N | N | N | N | GS | [71] |
| Saccharomyces kudriavzevii | 11.2 | 3,768 | 3,768 | N | Y | N | WGSC | [12] |
| Saccharomyces mikatae | 11.5 | 9,016 | 9,016 | N | Y | N | BI | [13] |
| Saccharomyces mikatae | 10.8 | 3,100 | 3,100 | N | Y | N | WGSC | [12] |
| Saccharomyces paradoxus | 11.9 | 8,939 | 8,939 | N | Y | N | BI | [13] |
| Saccharomyces servazziif | 2.0 | N | N | N | N | N | GS | [72] |
| Pichia angustaf | 4.5 | N | N | N | N | N | GS | [73] |
| Pichia stipitis | 15.4 | 5,839 | 8,428 | N | Y | N | JGI | [74] |
| Pichia sorbitophilaf | 3.8 | N | N | N | N | N | GS | [75] |
| A: Candida lipolytica T: Yarrowia lipolytica | 20.5 | 6,524 | 7,264 | 6 | Y | N | CBS | [58] |
| A: Candida lipolytica T: Yarrowia lipolyticaf | 4.6 | N | N | N | N | N | GS | [76] |
| Zygosaccharomyces rouxiif | 4.1 | N | N | N | N | N | GS | [77] |
| Taphrinomycotina (Subphylum) | ||||||||
| Pneumocystis cariniic, d | 6.3 | 4,020 | N | N | N | N | SI | N |
| Schizosaccharomyces japonicus | 11.3 | 5,172 | 10,321 | N | Y | N | BI | N |
| Schizosaccharomyces pombe | 12.6 | 5,058 | 9,869 | 3 | Y | N | GDB | [78] |
| Schizosaccharomyces octosporus | 11.2 | 4,925 | 10,168 | N | N | N | BI | N |
| Total | 424.6 | 176,444 | 188,121 | 5 | 28 | 0 | ||
aA indicates anamorph name and T presents teleomorph name of fungi.
bC means chromosomes, I indicates InterPro, and E presents EST.
cIncomplete coverage of genome information
dInsufficient exon/intron information
eTaxonomy based on [28]
fSequences from Random Sequence Tag (RST)
'Y' indicates the existence of information in each field, and 'N' indicates the lack of information.