Table 3.
List and characteristics of the genomes belonging to the phyla Basidiomycota, Chytridiomycota, and Microsporidia, the subphylum Mucoromycotina, and the phylum Peronosporomycota (oomycetes) archived in SNUGB.
| Speciesa | Size (Mb) | # of ORFs | # of Exons | Cb | Ib | Eb | Source | Refs |
| Fungi (Kingdom)e | ||||||||
| Basidiomycota (Phylum) | ||||||||
| Agricomycotina (Subphylum) | ||||||||
| Postia placenta | 90.9 | 17,173 | 116,596 | N | Y | N | JGI | N |
| T: Phanerochaete chrysosporium A: Sporotrichum pruinosum | 35.1 | 10,048 | 58,746 | N | Y | N | JGI | [79] |
| Coprinus cinereus | 36.3 | 13,544 | 72,887 | N | Y | N | BI | N |
| Laccaria bicolor | 64.9 | 20,614 | 111,290 | N | Y | N | JGI | [80] |
| A: Cryptococcus neoformans Serotype A T: Filobasidiella neoformans Serotype A | 19.5 | 7,302 | 43,325 | 20 | Y | N | BI | N |
| A: Cryptococcus neoformans Serotype B T: Filobasidiella neoformans Serotype B | 19.0 | 6,870 | 40,589 | N | Y | N | NCBI | N |
| A: Cryptococcus neoformans Serotype D B-3501A T: Filobasidiella neoformans Serotype D B-3501A | 18.5 | 6,431 | 40,942 | N | Y | N | SGTC | [41] |
| A: Cryptococcus neoformans Serotype D JEC21 T: Filobasidiella neoformans Serotype D JEC21 | 19.1 | 6,475 | 40,811 | N | Y | N | SGTC | [41] |
| Pucciniomycotina (Subphylum) | ||||||||
| Sporobolomyces roseus | 21.2 | 5,536 | 39,911 | N | Y | N | JGI | N |
| Puccinia graminis | 88.7 | 20,567 | 95,838 | N | Y | N | BI | N |
| Ustilaginomycotina (Subphylum) | ||||||||
| Malassezia globosa CBS7966 | 9.0 | 4,286 | 4,286 | N | N | N | PGC | [15] |
| Malassezia restricta CBS7877c | 4.6 | N | N | N | N | N | PGC | [15] |
| Ustilago maydis 521 | 19.7 | 6,689 | 11,589 | N | Y | N | BI | [81] |
| Ustilago maydis FB1 | 19.3 | 6,950 | 10,310f | N | Y | N | BI | [81] |
| Chytridiomycota (Phylum) | ||||||||
| Batrachochytrium dendrobatidis JEL423 | 23.9 | 8,818 | 38,551 | N | Y | N | BI | N |
| Batrachochytrium dendrobatidis JAM81 | 24.3 | 8,732 | 37,423 | N | Y | N | JGI | N |
| Mucoromycotina (Subphylum incertae sedis) | ||||||||
| Rhizopus oryzae | 46.1 | 17,467 | 57,981 | N | Y | N | BI | N |
| Phycomyces blakesleeanus | 55.9 | 14,792 | 71,502 | N | Y | N | JGI | N |
| Microsporidia (Phylum) | ||||||||
| Encephalitozoon cuniculi | 2.5 | 1,996 | 2,002 | N | Y | N | GS | [82] |
| Antonospora locustaed | 6.1 | 2,606 | N | N | N | N | JBPC | N |
| Stramenopila (Kingdom)e | ||||||||
| Peronosporomycota (Phylum) | ||||||||
| Phytophthora capsici | 107.8 | 17,414 | 45,661 | N | N | N | JGI | N |
| Phytophthora infestansd | 228.5 | 22,658 | N | N | N | N | BI | N |
| Phytophthora ramorum | 66.7 | 15,743 | 40,639 | N | Y | N | JGI | [83] |
| Phytophthora sojae | 86.0 | 19,027 | 53,552 | N | Y | N | JGI | [83] |
| Hyaloperonospora parasitica | 83.6 | 14,789 | 24,907 | N | Y | N | VBI | N |
| Pythium ultimum | 44.3 | N | N | N | N | N | N | |
| Total | 1,241.5 | 276,527 | 1,058,878 | 1 | 20 | 0 | ||
aA indicates anamorph name and T presents teleomorph name of fungi
bC means chromosomes, I indicates InterPro, and E presents EST.
cIncomplete coverage of genome information
dInsufficient exon/intron information
eTaxonomy based on [28]
fORFs and exons were predicted by AUGUSTUS 2.0.3 with species-specific training datasets [55].
'Y' indicates the existence of information in each field, and 'N' indicates the lack of information.