Table 4.
List and characteristics of the non-fungal genomes archived in SNUGB.
| Speciesa | Size (Mb) | # of ORFs | # of Exons | Cb | Ib | Eb | Source | Refs |
| Chloroplastida (Kingdom)e | ||||||||
| Streptophyta (Phylum) | ||||||||
| Arabidopsis thaliana | 119.2 | 28,581 | 150,369 | 5 | Y | N | TAIR | [33] |
| Carica papaya | 271.7 | N | N | N | N | N | PGSC | [84] |
| Glycine max | 996.9 | 62,199 | 281,102 | N | N | N | JGI | N |
| Lycopersicon esculentumc | 39.9 | 8,725 | 29,707 | N | Y | N | SOL | N |
| Medicago truncatula | 278.7 | 38,334 | 122,889 | 8 | Y | N | MTGSP | [85-87] |
| Oryza sativa var. Indicad | 426.3 | 49,710 | N | N | N | N | BGI | [88,89] |
| Oryza sativa var. Japonica | 372.1 | 66,710 | 319,140 | 12 | Y | N | IRGSP | [89,90] |
| Populus trichocarpa | 485.5 | 45,555 | 193,687 | N | Y | N | JGI | [91] |
| Ricinus communisd | 362.5 | 38,613 | N | N | N | N | TIGR | N |
| Selaginella moellendorffii | 212.8 | 22,285 | 124,645 | N | Y | N | JGI | N |
| Sorghum bicolor | 738.5 | 36,338 | 165,149 | 11 | Y | N | JGI | N |
| Vitis vinifera | 497.5 | 30,434 | 149,351 | 19 | Y | N | GS | [92] |
| Zea maysd | 2,314.7 | 420,732 | N | N | N | N | MGSP | N |
| Metazoa (Kingdom) | ||||||||
| Arthropoda (Phylum) | ||||||||
| Apis mellifera | 235.2 | 11,062 | 71,496 | N | N | N | HBGP | [93] |
| Acyrthosiphon pisum | 446.6 | N | N | N | N | N | BCM | N |
| Bombyx mori | 397.7 | 21,302 | 82,381 | N | N | N | BGI | [94] |
| Drosophila ananassae | 231.0 | 15,276 | 56,595 | N | N | N | FB | [95] |
| Drosophila erecta | 152.7 | 15,324 | 56,924 | N | N | N | FB | [95] |
| Drosophila grimshawi | 200.5 | 15,270 | 56,647 | N | N | N | FB | [95] |
| Drosophila melanogaster | 168.7 | 20,923 | 96,745 | N | N | N | FB | [96] |
| Drosophila mojavensis | 193.8 | 14,849 | 55,013 | N | N | N | FB | [95] |
| Drosophila persimilis | 188.4 | 17,235 | 59,116 | N | N | N | FB | [95] |
| Drosophila pseudoobscura | 152.7 | 16,363 | 57,864 | N | N | N | FB | [97] |
| Drosophila sechellia | 166.6 | 16,884 | 58,584 | N | N | N | FB | [95] |
| Drosophila simulans | 137.8 | 15,983 | 54,294 | N | N | N | FB | [95] |
| Drosophila virilise | 206.0 | 14,680 | 55,005 | N | N | N | FB | [95] |
| Drosophila willistoni | 235.5 | 15,816 | 56,641 | N | N | N | FB | [95] |
| Drosophila yakuba | 165.7 | 15,423 | 59,098 | N | N | N | FB | [95] |
| Glossina morsitans | 205.7 | N | N | N | N | N | TIGR | N |
| Nasonia vitripennis | 239.6 | 27,957 | 98,570f | N | N | N | BCM | N |
| Tribolium castaneum | 152.1 | 14,274 | 58,381f | N | N | N | BCM | N |
| Nematoda (Phylum) | ||||||||
| Caenorhabditis elegans | 100.3 | 26,902 | 175,232 | 7 | N | N | WB | [34] |
| Caenorhabditis briggsaed | 108.5 | 20,669 | N | N | N | N | WB | [98] |
| Caenorhabditis remanei | 145.4 | N | N | N | N | N | WB | N |
| Vertebrata (Phylum) | ||||||||
| Homo sapiens Celera assembly | 2,828.4 | 28,057 | 273,999 | N | N | N | NCBI | [99] |
| Homo sapiens HuRef assembly | 2,843.9 | 27,937 | 273,135 | N | N | N | NCBI | [100] |
| Homo sapiens NCBI Reference | 2,870.8 | 29,319 | 284,553 | N | N | N | NCBI | [100] |
| Homo sapiens | 3,665.5 | 43,570 | 452,099 | 29 | N | N | EM | [100] |
| Total | 21,241.0 | 1,294,281 | 4,142,169 | 7 | 8 | 0 | ||
aA indicates anamorph name and T presents teleomorph name of fungi
bC means chromosomes, I indicates InterPro, and E presents EST.
cIncomplete coverage of genome information
dInsufficient exon/intron information
eTaxonomy based on [101]
fORFs and exons were predicted by AUGUSTUS 2.0.3 with species-specific training datasets [55].
'Y' indicates the existence of information in each field, and 'N' indicates the lack of information.