Table II.
PFAM protein domains enriched in response to PM
Genes encoding proteins with enriched PFAM domains (Finn et al., 2008) are provided in Supplemental Worksheet S5.
| PFAM Domain | Enrichment | Adjusted P | No. in T2 Set | No. in ATH1 |
|---|---|---|---|---|
| ICS1 independent | ||||
| Chitin recognition protein (PF00187) | 16.3 | 3.00E-04 | 6 | 8 |
| Dimerization domain (PF08100) | 9.1 | 5.00E-02 | 5 | 12 |
| Patatin-like phospholipase (PF01734) | 7.8 | 9.00E-02 | 5 | 14 |
| Berberine and berberine-like (PF08031) | 5.8 | 5.00E-02 | 7 | 26 |
| ICS1 impacted | ||||
| Ferritin-like domain (PF00210) | 18.5 | 7.00E-02 | 3 | 4 |
| Haloacid dehalogenase-like hydrolase (PF08282) | 13.7 | 6.00E-03 | 5 | 9 |
| Calreticulin family (PF00262) | 12.3 | 6.00E-02 | 4 | 8 |
| Calcium-binding EGF domain (PF07645) | 12.3 | 6.00E-02 | 4 | 8 |
| UAA transporter family (PF08449) | 11.0 | 7.00E-02 | 4 | 9 |
| Chitinase class I (PF00182)a | 8.2 | 7.00E-02 | 5 | 15 |
| S-locus glycoprotein family (PF00954) | 5.1 | 8.00E-02 | 7 | 34 |
| WRKY DNA-binding domain (PF03106)a | 5.0 | 1.00E-03 | 13 | 64 |
| Domain of unknown function DUF26 (PF01657)a | 4.6 | 2.00E-03 | 13 | 70 |
| LRR N-terminal domain (PF08263)a | 2.8 | 2.00E-03 | 24 | 209 |
| LRR (PF00560)a | 2.7 | 1.00E-07 | 53 | 488 |
| Protein kinase domain (PF00069)a | 2.4 | 1.00E-10 | 86 | 888 |
a
In both T2 data sets, with values shown for the ics1 versus the wild-type T2 set.