Table III.

PM-impacted transcription factors

Transcription factors are defined as containing a DNA-binding domain (Davuluri et al., 2003; Rhee et al., 2003; Palaniswamy et al., 2006). Altered expression was determined using T²-selected gene sets for the wild type and ics1 versus the wild type. Locus numbers in boldface represent novel transcription factors with no known role in (a)biotic stress, defined by mutation or overexpression of the transcription factor.

Family/Domain	Wild Type Only	Both	ics1 versus Wild Type Only
NAC	At3g10500, At3g12910	At2g43000, At2g17040	At1g01010, At1g25580, At1g34180, At1g69490
AP2			At1g25560
ERF	At4g17500 (ERF1)	At5g47220 (ERF2)	At5g25190 At3g50260 (ERF11) At1g06160 (ORA59)
bHLH	At2g18300, At4g01460, At5g15160, At5g46690, At5g39860 (PRE1) At1g73830 (BEE3)	At3g05800	At4g00050 (UNE10) At3g56980 (ORG3) At5g04150
MYB	At1g18570 (MYB51)		At5g05090 At4g17695 (KAN3)
WRKY	At3g01970 (WRKY45) At2g46400 (WRKY46) At1g62300 (WRKY6) At1g29860 (WRKY71)	At4g31800 (WRKY18) At5g24110 (WRKY30) At2g38470 (WRKY33) At5g22570 (WRKY38) At1g80840 (WRKY40) At4g01720 (WRKY47) At4g23810 (WRKY53) At2g25000 (WRKY60) At5g13080 (WRKY75)	At2g30250 (WRKY25) At2g40750 (WRKY54) At3g01080 (WRKY58) At3g56400 (WRKY70)
Zinc fingers
CCCH-type	At3g55980 At2g40140 (ZFAR1)		At3g21810
DHHC-type	At1g69420
GATA-type		At5g66320
C2H2-type	At3g13810 (IDD11) At1g27730 (STZ) At5g59820 (RHL41) At4g17810	At5g67450 (AZF1)	At3g45260 At3g57480 At2g01650 (PUX2)
bZIP	At3g58120	At2g46270 (GBF3)
CCR4-NOT	At5g22250
Homeobox	At4g17460 (HAT1)		At4g16780
Heat shock factor	At4g36990 (HSF4)		At4g18880, At1g67970
B3 domain	At1g68840 (RAV2)	At1g13260 (RAV1)	At2g24650, At3g53310
Transcription initiation			At1g75510 (TFII-B) At1g17440 (TAF12B)
Miscellaneous	At4g17600 (LIL3.1) At1g18330 (EPR1) At1g22590 (AGL87) At5g08330		At4g14560 (IAA1) At1g75080 (BZR1) At5g63080 At1g07640 (OBP2) At1g33420 At5g13730 (SIG4)