. Author manuscript; available in PMC: 2009 Nov 7.

Published in final edited form as: J Mol Biol. 2008 Jul 16;383(2):324–346. doi: 10.1016/j.jmb.2008.07.024

Table 4.

The dependence of the initial binding heat of 38/160bp DNA on the choice of the binding site size of a large site size mode

	20 bp	25 bp	30 bp	34 bp
k_i (M⁻¹)	1.4 × 10⁵	2.1 × 10⁵	4.3 × 10⁵	2.1 × 10⁶
(i = 20, 25, 30 or 34)
ΔH_i (kcal/mol)	7.7	7.7	7.7	7.7
f_i,160bp / f_i,38bp	0.48 / 0.39	0.57 / 0.41	0.72 / 0.48	0.92 / 0.72
f_10,160bp / f_10,38bp	0.39 / 0.45	0.32 / 0.43	0.21 / 0.38	0.06 / 0.21
f_6,160bp / f_6,38bp	0.13 / 0.16	0.11 / 0.16	0.07 / 0.14	0.02 / 0.07
Q_calc,160bp / Q_calc,38bp	5.1 / 4.6	5.6 / 4.7	6.3 / 5.0	7.3 / 6.3
Q_obs,160bp / Q_obs,38bp	7.3 / 6.5	7.3 / 6.5	7.3 / 6.5	7.3 / 6.5