Table 3.
Comparison of array results with the Allen Brain Atlas.
| Gene Symbol | CA1 | CA3 | DG | ABA Pattern |
|---|---|---|---|---|
| GRIK4 | 5 | 174 | 45 | Same |
| KCND3 | 17 | 102 | 152 | Same |
| TRPC6 | 14 | 22 | 130 | Same |
| DCN | 347 | 35 | 25 | Same |
| FOXO1A | 7 | 24 | 56 | Same |
| LPHN2 | 64 | 6 | 3 | Same |
| PRSS23 | 33 | 619 | 35 | Same |
| SOCS2 | 21 | 79 | 8 | Same |
| PTN | 817 | 197 | 86 | Same |
| DDIT4L | 22 | 35 | 489 | Same |
| TLE3 | 423 | 174 | 46 | Same |
| EPHA5 | 366 | 1484 | 175 | Same |
| MEF2C | 98 | 57 | 510 | Same |
| INHBB | 150 | 23 | 3 | Same |
| RASL11B | 774 | 295 | 40 | Same |
| LPL | 508 | 863 | 21 | Same |
| TIAM1 | 5 | 8 | 233 | Same |
| CALB1 | 258 | 39 | 1099 | Same |
| SULF2 | 275 | 963 | 84 | Same |
| NEGR1 | 141 | 250 | 1667 | Same |
| DUSP6 | 815 | 416 | 31 | Same |
| SIPA1L2 | 14 | 15 | 133 | Same |
| KCNN2 | 240 | 172 | 23 | Same |
| NNAT | 90 | 2465 | 233 | Same |
| SV2B | 231 | 1346 | 62 | Same |
| PLAGL1 | 1 | 72 | 27 | Same |
| PKIG | 126 | 15 | 336 | Same |
| KLK8 | 144 | 51 | 1 | Same |
| PCBD1 | 5 | 72 | 16 | Same |
| BID3 | 5 | 24 | 84 | Same |
| SLC6A7 | 47 | 156 | 19 | Same |
| GRM2 | 20 | 23 | 240 | Same |
| NTF3 | 26 | 57 | 379 | Same |
| GPC3 | 2 | 2 | 120 | Same |
| PCP4 | 71 | 725 | 2085 | Same |
| KCNA1 | 24 | 390 | 243 | Same |
| CCK | 1099 | 340 | 127 | Same |
| PERP_PREDICTED | 3 | 3 | 86 | Same |
| AUTS2_PREDICTED | 79 | 146 | 755 | Same |
| FZD7_PREDICTED | 99 | 21 | 8 | Same |
| TP53I11_PREDICTED | 26 | 18 | 183 | Same |
| MAN1A_PREDICTED | 898 | 412 | 31 | Same |
| RREB1_PREDICTED | 25 | 21 | 322 | Same |
| LATS2_PREDICTED | 470 | 1052 | 89 | Same |
| SEMA6D_PREDICTED | 88 | 59 | 524 | Same |
| NOV | 461 | 179 | 34 | CA1>>CA3,DG |
| KHDRBS2 | 14 | 8 | 92 | DG,CA1>>CA3 |
| RGS10 | 210 | 152 | 2085 | DG,CA3>CA1 |
| GRP | 14 | 98 | 12 | Diffuse |
| SLC17A6 | 407 | 159 | 28 | Diffuse |
| JMJD3_PREDICTED | 16 | 33 | 134 | Diffuse |
| S100A10 | 674 | 133 | 33 | Diffuse |
| GDF10 | 4 | 17 | 89 | Diffuse |
| JUN | 31 | 134 | 299 | Diffuse |
| HCRTR2 | 9 | 73 | 8 | Diffuse |
| ARG1 | 29 | 28 | 409 | n.d. |
| NELL1 | 917 | 625 | 108 | n.d. |
| DSC2 | 2 | 21 | 21 | n.d. |
| CTSK | 190 | 33 | 3 | n.d. |
| CYP27A1 | 20 | 274 | 14 | n.d. |
| CST6 | 24 | 399 | 74 | n.d. |
| PLSCR1 | 4 | 41 | 90 | n.d. |
| PKIB | 5 | 37 | 67 | n.d. |
Transcripts with an 8-fold difference between two hippocampal regions were visually compared against in situ hybridization pictures in the Allen Brain Atlas. Relative expression levels were confirmed for the majority of transcripts. n.d., not detected.