Table 1.

Summary of DNA microarray and RT–PCR analyses

Gene ID	Name	Definition	Microarray	RT–PCR	Mukhopadhyay et al.a	CTb	Nicholson et al.a	Belland et al.a
CPj0331	–	CT082 hypothetical protein	Late	I	ND	CT082	Late	ND
CPj0332	–	CHLTR T2 protein	Late	I	ND	–
CPj0333	ltuB	LtuB protein	Late	I	ND	CT080	Late	Late
CPj0558	omcA	9 kDa cysteine-rich lipoprotein	Late	I	ND	CT444	Late	Late
CPj0416	himD	Integration host factor alpha	Late	II	ND	CT267	Midlate-I	ND
CPj0453	pmp14	Polymorphic outer membrane protein H family	Late	II	ND	CT872	Midlate-I	Late
CPj0708	–	CT668 hypothetical protein	Late	II	ND	CT668	Midlate-I	ND
CPj0709	–	CT667 hypothetical protein	Late	II	ND	CT667	Midlate-I	ND
CPj0710	–	CT666 hypothetical protein	Late	II	Up	CT666	Midlate-I	ND
CPj0728	–	CHLPN 76 kDa homolog_1 (CT622)	Late	II	ND	CT622	Late	ND
CPj0854	ompB	Outer membrane protein B	Late	II	ND	CT713	Midlate-II	ND
CPj0933	–	Disulfide bond isomerase	Late	II	ND	CT783	Midlate-II	Late
CPj0970	yccA2	Transport permease	Late	II	ND	CT819	Midlate-I	ND
CPj0971	ftsY	Cell division protein ftsY	Late	II	ND	CT820	Constitutive	ND
CPj0148	–	S/T protein kinase	Late	Const.	ND	CT145	Constitutive	ND
CPj0934	rnpA	Ribonuclease P protein component	Late	Const.	ND	CT784	Constitutive	ND
CPj0935	rl34	L34 ribosomal protein	Late	Const.	ND	CT785	Constitutive	ND
CPj0577	–	SWIB (YM74) complex protein	NL	Const.	ND	CT460	Constitutive	ND
CPj0695	ompA	Major outer membrane protein	NL	Const.	Up	CT681	Midlate-II	ND
CPj0769	topA	DNA topoisomerase I-fused to SWI domain	NL	Const.	ND	CT643	Late	ND
CPj0878	set	SET domain protein	NL	Latec	ND	CT737	Constitutive	ND
CPj0244	adk	Adenylate kinase	NC	I	Up	CT128	Constitutive	ND
CPj0384	hctB	Histone-like protein 2	NC	I	ND	CT046	Late	Late
CPj0678	–	Hypothetical protein	NC	I	ND	–
CPj0886	hctA	Histone-like developmental protein	NC	I	ND	CT743	Constitutive	Late
CPj0466	pmp15	Polymorphic outer membrane protein E family	NC	II	ND	CT869	Late	ND
CPj0559	–	CT444.1 hypothetical protein	NC	II	ND	CT444.1	ND	ND
CPj0238	zwf	Glucose-6-P dehyrogenase	NC	Const.	ND	CT185	Constitutive	ND
CPj0679	pgk	Phosphoglycerate kinase	NC	Const.	ND	CT693	Late	ND

Late, late-stage gene; NL, not-late-stage genes (mid or constitutive genes); NC, not clustered in Fig. 2A; I, class I; II, class II; Const., constitutive in Fig. 3; ND, not determined.

^aThe classifications follow the cited reference.

^bOrtholog of C. trashomatis represented as gene number. ‘ − ’, no ortholog.

^cMurata et al (2006).