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. 2008 May 16;15(3):151–161. doi: 10.1093/dnares/dsn009

Figure 3.

Figure 3

(A) A comparison of the genomic location that contains the pdu-cbi-cob-hem gene cluster of L. reuteri JCM 1112T (center) with the corresponding location of L. fermentum IFO 3956 (upper) and L. plantarum WCFS1 (lower). Genes in the pdu-cbi-cob-hem gene cluster are depicted by arrows indicating the transcription direction with the same color codes as described in the Fig. 2. Genes conserved between the three genomes are colored gray and light blue bars indicate orthologous regions. The GC content at the third codon position of the ORFs in L. reuteri JCM 1112T is indicated under each ORF. Red lines represent the GC content at the third codon position of the ORFs in the pdu-cbi-cob-hem cluster (LAR_1583-1640). The blue horizontal line indicates the average GC content (32%) at the third codon position of the remaining ORFs in the L. reuteri JCM 1112T genome excluding the pdu-cbi-cob-hem gene cluster. (B) The pdu-cbi-cob gene cluster arrangement in L. reuteri JCM 1112T, S. typhimurium LT2, L. monocytogenes EGD-e, Y. enterocolitica subsp. enterocolitica 8081, and S. sanguinis SK36 are shown using the same color coding as described in (A).