TABLE 2.

Oligonucleotides used as primers in PCR reactions

Code	Sequence	Location in sequence AY497292 (F-ga)	Reference
UNFOR1	5′-TTGCGACCTCGATGTTGGC-3′	16,497–16,515	Caoet al. (2004a)
UNREV1	5′-AGCTCACCACCTATTCCTC-3′	1170–1188	Caoet al. (2004a)
12SF1134	5′-ACCAGGATTAGATACCCTGT-3′	14,412–14,431	This study
16SBR	5′-CCGGTCTGAACTCAGATCACGT-3′	16,577–16,598	Rawson and Hilbish (1995)
UCYTB270R	5′-AANAGGAARTAYCAYTCNGGYTG-3′	2075–2097	Merritt et al. (1998)
UARW2	5′-GAGAAAGTGGTGAATTTGACC-3′	759–780a	This study
cytbtfR	5′-CATACATAGCGGAGCATACTC-3′	1744–1764	This study
UCYTB151F	5′-TGTGGRGCNACYGTWATYACTAA-3′	1691–1713	Merritt et al. (1998)
16SF3160	5′-AGCTACTCTAGGGATAACAGC-3′	16,440–16,460	This study
CytbCfR	5′-ACTTTGCATTACAGACTGTC-3′	1774–1793	This study
UCYTB144F	5′-TGAGSNCARATGTCNTWYTG-3′	1673–1692	Merritt et al. (1998)
UCYTB272R	5′-GARTGGTAYTTYCTNTTYGC-3′	2081–2100	Merritt et al. (1998)
12SF1186	5′-CTAAACATTTGGTTGTCAAAGAG-3′	14,464–14,486	This study
16sCmR2	5′-AGGTCTTGCTTGTGAGCAA-3′	16,401–16,421b	This study
Ucytb1R	5′-CCYARRGGRTTATTDCTHCC-3′	1880–1899	This study
16SAR	5′-CGCCTGTTTATCAAAAACAT-3′	16,071–16,090	Rawson and Hilbish (1995)
M-nad5F	5′-CTCTATGTATGGCTGTTTGTGAGGC-3′	11,697–11,721	Ort and Pogson (2007)
M-nad2R	5′-CAGAAAAGTTTACCGCCAARACC-3′	7978–8000	Ort and Pogson (2007)
F-nad5F2	5′-ATTAGCTGGTTCAAGCGCAGTG-3′	12,566–12,587	This study
F-nad2R	5′-ATGCCGCTGGCCTAAAAGC-3′	8038–8056	This study

^aThe target sequence in M. trossulus is shorter by one nucleotide.

^bThe target sequence in M. californianus is longer by two nucleotides.