TABLE 1.

Physical and genetic mapping of TelContigs

TC	No. of reads	Linked to assembly contiga	TERMINUS linkageb	Plasmid clone(s)c	Cosmid clone(s)c	RFLP mapping	Map position inferredd	Gap size (kb)e	M clonef
1	2	7.247	7.247, 7.246	CW-TT010	—	IVR		0	—
2	3	—	—	CW-TT012	—	IR		?	pCW-TM001
3	3	—	—	YSK-A3	—	VIR		?	—
4	2	7.141	7.141	—	—	VIIR		?	pCW-TM003
5	9	—	7.74	JM-TT004	OR708	IIIL		?	MV789
6	8	—	7.77	CW-TT09	OR711	IIR		0	MV752
7	19	1.718	7.17	YSK-B8	OR713	IIIR		1.92	MV762
8	21	7.79	7.79	YSK-A10	OR712		IVL	0	MV763
9	12	—	7.81	OR078	OR709	IIL		1.48	MV756
10	27	1.331	7.37	—	OR703		VR	2.13	—
11	25	7.34	7.34	YSK-A9	OR706	VIL		0	MV791
12	27	7.93	7.93	YSK-A2	OR726	IL		0	pMV-Tel-IL
13	47	7.251	7.251	JM-TT001	OR710	VIIL		−0.43g	MV750
14	5	7.162	7.162	CW-TT004	—	VL		?	—

^aShows TCs that were already incorporated into at least one of the genome assemblies. The number before the period indicates the assembly version. A dash indicates that the TC was not represented in any assembly.

^bA dash indicates that the TERMINUS was not able to identify a link to the assembly.

^cListed are the IDs of individual clones that represent each TC. A dash indicates that a corresponding clone was not identified.

^dMap position was inferred on the basis of the physical location of the contig inferred from the genome database (http://www.broad.mit.edu/annotation/genome/neurospora/maps/Index.html).

^eA zero indicates that the TelContig was already incorporated into the assembly. A question mark denotes remaining gaps.

^fClones starting with “p” are plasmids; the remainder are cosmids.

^gContigs 7.251 and 7.78 actually overlap.