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. 2009 Mar;181(3):1129–1145. doi: 10.1534/genetics.107.084392

TABLE 1.

Physical and genetic mapping of TelContigs

TC No. of reads Linked to assembly contiga TERMINUS linkageb Plasmid clone(s)c Cosmid clone(s)c RFLP mapping Map position inferredd Gap size (kb)e M clonef
1 2 7.247 7.247, 7.246 CW-TT010 IVR 0
2 3 CW-TT012 IR ? pCW-TM001
3 3 YSK-A3 VIR ?
4 2 7.141 7.141 VIIR ? pCW-TM003
5 9 7.74 JM-TT004 OR708 IIIL ? MV789
6 8 7.77 CW-TT09 OR711 IIR 0 MV752
7 19 1.718 7.17 YSK-B8 OR713 IIIR 1.92 MV762
8 21 7.79 7.79 YSK-A10 OR712 IVL 0 MV763
9 12 7.81 OR078 OR709 IIL 1.48 MV756
10 27 1.331 7.37 OR703 VR 2.13
11 25 7.34 7.34 YSK-A9 OR706 VIL 0 MV791
12 27 7.93 7.93 YSK-A2 OR726 IL 0 pMV-Tel-IL
13 47 7.251 7.251 JM-TT001 OR710 VIIL −0.43g MV750
14 5 7.162 7.162 CW-TT004 VL ?
a

Shows TCs that were already incorporated into at least one of the genome assemblies. The number before the period indicates the assembly version. A dash indicates that the TC was not represented in any assembly.

b

A dash indicates that the TERMINUS was not able to identify a link to the assembly.

c

Listed are the IDs of individual clones that represent each TC. A dash indicates that a corresponding clone was not identified.

d

Map position was inferred on the basis of the physical location of the contig inferred from the genome database (http://www.broad.mit.edu/annotation/genome/neurospora/maps/Index.html).

e

A zero indicates that the TelContig was already incorporated into the assembly. A question mark denotes remaining gaps.

f

Clones starting with “p” are plasmids; the remainder are cosmids.

g

Contigs 7.251 and 7.78 actually overlap.