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. 2009 Jan 22;5(2):422–429. doi: 10.1021/ct8003707

Table 2. MM-PBSA Results Using iAPBSa.

iAPBS/MM-PBSA results H72Q-r std error of mean A52V S54N K66E std error of mean wild type std error of mean
experimental Kd 5.5 E(−9) M   1.1 E(−8) M   7.6 E(−6) M  
no water molecules included −47.7 3.1 −47.2 0.8 −44.1 1.2
interfacial water molecules (200) −146.3 4.7 −143.8 14.7 −148.2 3.0
intercalating water molecules −55.3 2.8 −54.3 0.8 −46.2 1.4
a

All results are in kcal/mol, except for the experimental Kd data. The internal entropy contributions are not included in these estimates since it was nearly the same for the three cases.