Table 2. MM-PBSA Results Using iAPBSa.
iAPBS/MM-PBSA results | H72Q-r | std error of mean | A52V S54N K66E | std error of mean | wild type | std error of mean |
---|---|---|---|---|---|---|
experimental Kd | 5.5 E(−9) M | 1.1 E(−8) M | 7.6 E(−6) M | |||
no water molecules included | −47.7 | 3.1 | −47.2 | 0.8 | −44.1 | 1.2 |
interfacial water molecules (200) | −146.3 | 4.7 | −143.8 | 14.7 | −148.2 | 3.0 |
intercalating water molecules | −55.3 | 2.8 | −54.3 | 0.8 | −46.2 | 1.4 |
All results are in kcal/mol, except for the experimental Kd data. The internal entropy contributions are not included in these estimates since it was nearly the same for the three cases.