Table 2. RNA−Protein Interactionsa.
| protein | RNA | length (Å) [standard deviation (Å)] | % time bond <3.5 Å |
|---|---|---|---|
| Leu63 N | Cg-7 O1P | 3.84 (0.99) | 55.50% |
| Gln70 NE2 | Un-11 O1P | 5.34 (1.78) | 19.62% |
| Ser67 OG | An-10 N3 | 4.67 (1.29) | 24.4% |
| Ser65 OG | Cg-8 O2′ | 4.86 (1.43) | 18.34% |
| Pro64 O | Ug-9 O2′ | 4.14 (0.68) | 19.62% |
| Asp62 OD1 | Cg-8 O2′ | 5.49 (1.64) | 20.73% |
| Met314 O | An-1 O2′ | 3.57 (1.22) | 71.29% |
| Glu119 OE1 | Cn+12 O5′ | 6.37 (4.17) | 25.84% |
| Asn120 ND2 | An+11 O1P | 3.36 (1.74) | 88.20% |
| Phe121b | Ug+4 O2′ | 7.85 (0.99) | 0.00% |
| Phe122b | Gg3 O2′ | 5.19 (0.48) | 0.00% |
| Arg194 NH2 | Gg+3 O1P | 3.09 (0.45) | 82.46% |
| Arg309 NH1 | An-1 O1P | 2.82 (0.12) | 99.84% |
| Arg309 NH1 | Cn-2 O2P | 2.94 (0.33) | 94.90% |
a
Distances and occupancy percentages are calculated over the dynamics phase only.
b
Side chain ring center of mass.