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. 2009 Jan 16;37(4):1323–1334. doi: 10.1093/nar/gkn1041

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© 2009 The Author(s)

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 5. — Example of high-coverage upstream sequence region with an experimentally proven site. The upstream regions of xbx-1 (F02D8.3) and its orthologues in C. briggsae, C. remanei, C. brenneri and C. japonica are indicated by black lines. The ATG of each transcript or putative orthologue is at the right edge of the figure. The logos of the top six most-conserved motifs and their IC are shown; the locations of these motifs in each upstream sequence are indicated by coloured bars. The locations of the remaining motifs are indicated by grey bars. Motifs are sorted by IC with the most conserved motif at the top. The experimentally proven DAF-19 site is indicated. The cisRED URL is indicated in Table 1.