Skip to main content
letter
. 2009 Feb;19(2):191–198. doi: 10.1101/gr.079244.108

Figure 2.

Figure 2.

Junction sequences of translocation-like rearrangements in the plasmid-based system. (A) Sequences of the PATRR11 side of the junction. The first line is the sequence of the proximal arm of PATRR11. Sequences from a total of 40 rearrangement-specific PCR products derived from primers A and D in Figure 1A were aligned. In some cases, the exact origin of some nucleotides at the junctions could not be determined (lowercase) since the nucleotides are identical between the PATRR11 and the PATRR22. (B) Sequences of the PATRR22 side of the rearranged molecules. Junction sequences identical between PATRR11 and PATRR22 are shown in italic. The 3 nt of clone 10 is an insertion from unknown origin at the junction. (C) The number of identical nucleotides between PATRR11 and PATRR22 at the junctions.