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. 2009 Mar 2;6:21. doi: 10.1186/1742-4690-6-21

Table 1.

Sequences of the region surrounding the CypA binding Loop in CA*

Virus Position and Sequence
--- CypA Binding Loop ---
80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100
NL4-3 W D R L H P V H A G P I A P G Q M R E P R
NRC1 . . . . . . A Q . . . V . . . . L . . . .
NRC2 . . . . . . . . . . . V . . . . . . . . .
NRC3-1 . . . V . . . . . . . . . . . . . . . . .
NRC3-5 . . . V . . . . . . . . . . . . . . . . .
NRC9 . . . . . . A . . . . V . . . . . . . . .
NRC10 . . . . . . A . . . . . . . . . I . . . .

*Numbers indicate the amino acid position in the CA protein. The CypA binding loop is indicated in italics [19]. The amino acid sequence for NL4-3 is given in single letter code. Only amino acids that differ from the NL4-3 sequence are shown for the other viruses.