Table 3.
Thermodynamic and kinetic parameters describing unfolding and CO binding of Fe2+ cyt c in the absence of denaturant (pH 7, 20 °C) predicted on the basis of Scheme 2
| Transition (states i ⬄ j) | forward rate (s−1) (i→j) | back rate (s−1) (j→i) | ΔGij (kcal mol−1) |
|---|---|---|---|
| N ⬄ Ma | 4.0×10−3 | 8.3×10−4 | 9.8 |
| M ⬄ Ub | − | − | 12.2 |
| M-CO ⬄ U-COb | − | − | 11.3 |
| M ⬄ M-COc | 6.4 | 2.9×10−4 | −5.8 |
| U ⬄ U-COc | 350 | 3.4×10−3 | −6.7 |
The forward rate, kNM, increases with GuHCl concentration (kinetic m-value mNM = 0.6 kcal mol−1 M−1) while the back rate, kMN, is assumed to be independent of denaturant (see ref.25).
Kinetic parameters describing the folding and unfolding transitions of Fe2+ cyt c in the presence and absence of CO will be reported elsewhere (Maki, Latypov, Hagen & Roder, in preparation).
The CO binding rates are apparent rate constants at 1 mM CO. CO binding and dissociation rates are independent of GuHCl concentrations, except for the M-CO -> M + CO transition, which has a small negative m-value (−0.15 kcal mol−1 M−1; Figure 10(b)).