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. 2009 Mar 12;4(3):e4833. doi: 10.1371/journal.pone.0004833

Table 2. Non-Vir Genes Within Predicted Operons Encoding the Rickettsia T4SS.

Islet1 vir 2 Associated non-Vir genes3 Distribution4
A B3 argB, acetylglutamate kinase Br, Bo, Fe, Ak, Ri, Rw
CHP, 95 aa Br, Bo, Fe, Ak, Ri
GTP-binding CHP, 212 aa Fe, Ak, Ri, Rw
A B3-B4a argB, acetylglutamate kinase Ma
GTP-binding CHP, 213 aa Ma
A B3-B6c putative ORF (fgenesb), 61 aa Af
argB, acetylglutamate kinase Co, Si, Af
GTP-binding CHP, 213 aa Co, Si, Af
putative ORF (fgenesb), 56 aa Co, Si, Af
A B6e vapB, antitoxin of VapB/VapC system Fe
vapC2, COG1487: PIN domain protein Fe
C B8a-B9a mrpD, Na(+)/H(+) antiporter subunit D Co, Si, Af
mrpC, Na(+)/H(+) antiporter subunit C Br, Ca, Fe, all SFG genomes
putative ORF (fgenesb), 49 aa Fe
C B9a mrpC, Na(+)/H(+) antiporter subunit C Bo
C D4 gppA, GTP dp pyrophosphatase All 13 genomes
vapB1, antitoxin of VapB/VapC system Br, Bo
vapC1, toxin of VapB/VapC system Br, Bo
ndhF, NAD(P)H dehydrogenase 5 Br
ptrB, protease 2 Br, Bo
D B1 COG0536, predicted GTPase Br
putative ORF (fgenesb), 84 aa Bo
putative ORF (fgenesb), 72 aa Bo
HP, 101 aa Fe
CHP, ∼171 aa All 13 genomes
HP, ∼130 Br, Fe
rickettsial palindromic element Fe
E B4b HP, 74 aa Fe
1

Corresponding to islets A (virB3-virB6e), C (virB9a-virD4), D (virB1), E (virB4b) (See Figure 9 ).

2

According to operon prediction by fgenesb [143].

3

Consensus annotation from PATRIC [80] or fgenesb prediction. HP = hypothetical protein, CHP = conserved hypothetical protein.

4

Taxa included within operon prediction. Underlined taxa depict split ORFs.