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. 2009 Mar 12;4(3):e4833. doi: 10.1371/journal.pone.0004833

Table 3. Summary Statistics for the Vir Genes Encoding the Rickettsia T4SS.

Vir aa seqs nt seqs
div1 PI2 Tree3 div1 PI2 Tree3 GC4 ts/tv5 dN/dS6
D4 4.2 54 N 8.1 329 N 0.35 1.9 0.06
B4a 3.7 72 N 6.7 380 N 0.34 2.5 0.05
B4b 9.9 195 N 9.2 570 N 0.28 1.9 0.13
B11 4.8 33 N 9.7 186 N 0.37 1.9 0.06
B6a 14.7 374 N 12.8 1054 N 0.36 1.5 0.23
B6b 13.2 196 N 11.2 565 N 0.34 1.9 0.2
B6c 15.2 285 N 13.2 848 N 0.35 1.2 0.27
B6d 12.9 263 N 10.3 682 N 0.32 1.9 0.18
B6e 12.4 308 N 11.1 871 N 0.33 1.6 0.17
B8a 13.4 63 Y 10 163 N 0.26 1.7 0.26
B8b 9.4 55 N 9 161 N 0.31 1.3 0.13
B9a 4.7 27 N 7.6 130 N 0.35 1.8 0.06
B9b 10.8 43 N 8.2 98 N 0.26 2.5 0.14
B10 10.5 108 N 11 356 N 0.38 1.4 0.14
B3 4 8 N 6.2 43 N 0.31 1.4 0.1
B1 16.3 93 N 13.9 271 N 0.32 1.3 0.6
B2 11.6 35 N 10.5 104 N 0.32 1.9 0.26
B7 15.3 23 N 11 47 N 0.32 1.4 0.21
1

Avg. pairwise differences across all sequences divided by avg. sequence length.

2

Number of parsimony informative characters.

3

Tree corroborates (Y) or disagrees with (N) species tree. All trees are shown in Figure S4 .

4

%GC of all codon positions.

5

Ratio of transitions to transversions.

6

Ratio of non-synonymous to synonymous substitutions.