Table 3. Summary Statistics for the Vir Genes Encoding the Rickettsia T4SS.
Vir | aa seqs | nt seqs | |||||||
div1 | PI2 | Tree3 | div1 | PI2 | Tree3 | GC4 | ts/tv5 | dN/dS6 | |
D4 | 4.2 | 54 | N | 8.1 | 329 | N | 0.35 | 1.9 | 0.06 |
B4a | 3.7 | 72 | N | 6.7 | 380 | N | 0.34 | 2.5 | 0.05 |
B4b | 9.9 | 195 | N | 9.2 | 570 | N | 0.28 | 1.9 | 0.13 |
B11 | 4.8 | 33 | N | 9.7 | 186 | N | 0.37 | 1.9 | 0.06 |
B6a | 14.7 | 374 | N | 12.8 | 1054 | N | 0.36 | 1.5 | 0.23 |
B6b | 13.2 | 196 | N | 11.2 | 565 | N | 0.34 | 1.9 | 0.2 |
B6c | 15.2 | 285 | N | 13.2 | 848 | N | 0.35 | 1.2 | 0.27 |
B6d | 12.9 | 263 | N | 10.3 | 682 | N | 0.32 | 1.9 | 0.18 |
B6e | 12.4 | 308 | N | 11.1 | 871 | N | 0.33 | 1.6 | 0.17 |
B8a | 13.4 | 63 | Y | 10 | 163 | N | 0.26 | 1.7 | 0.26 |
B8b | 9.4 | 55 | N | 9 | 161 | N | 0.31 | 1.3 | 0.13 |
B9a | 4.7 | 27 | N | 7.6 | 130 | N | 0.35 | 1.8 | 0.06 |
B9b | 10.8 | 43 | N | 8.2 | 98 | N | 0.26 | 2.5 | 0.14 |
B10 | 10.5 | 108 | N | 11 | 356 | N | 0.38 | 1.4 | 0.14 |
B3 | 4 | 8 | N | 6.2 | 43 | N | 0.31 | 1.4 | 0.1 |
B1 | 16.3 | 93 | N | 13.9 | 271 | N | 0.32 | 1.3 | 0.6 |
B2 | 11.6 | 35 | N | 10.5 | 104 | N | 0.32 | 1.9 | 0.26 |
B7 | 15.3 | 23 | N | 11 | 47 | N | 0.32 | 1.4 | 0.21 |
Avg. pairwise differences across all sequences divided by avg. sequence length.
Number of parsimony informative characters.
Tree corroborates (Y) or disagrees with (N) species tree. All trees are shown in Figure S4 .
%GC of all codon positions.
Ratio of transitions to transversions.
Ratio of non-synonymous to synonymous substitutions.