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. 2009 Mar 12;4(3):e4833. doi: 10.1371/journal.pone.0004833

Table 4. Bioinformatic and Laboratory Evidence for a Functional Rickettsiales vir Homolog (rvh) T4SS.

Vir1 Conservation2 Rvh3 Size4 Evidence5
B4 100 B4a 805 A, B, G
B4b 810 C, D, G
B10 100 B10 483 A, D, G, H
B11 100 B11 334 A, D, E, H
B9 97 B9a 250 E, G
B9b 158 A, D, Fa, G, H
D4 92 D4 591 D, G, H
B6 90 B6a 426
B6b 407 B, G
B6c 425 Fa, Fb, G
B6d 420 B, Fa, Fb, G
B6e 389 Fa, Fb, G
B8 90 B8a 232 C, D
B8b 243 A, C, D, E, G
B1 53 B1* 252
B5 52
B2 37 B2* 123
B3 37 B3 95
B7 23 B7* 59 C, D, Fa, Fb
1

Vir and Vir-like proteins, following the nomenclature of the A. tumefaciens vir system.

2

Percentage of 62 bacterial T4SSs that contain each Vir or Vir-like protein [29].

3

Rickettsiales vir homolog. Proteins previously not annotated as Vir via consensus annotation are noted with an asterisk.

4

Average size of the Rickettsia orthologs across 13 genome sequences. Numbers for RvhB6a-e show only the VirB6/TrbL domains; avg, lengths of full sized RvhB6 proteins are as follows: RvhB6a = 1055 aa; RvhB6b = 674 aa; RvhB6c = 971 aa; RvhB6d = 886 aa; RvhB6e = 1154 aa.

5

Laboratory studies demonstrating putative function. A = gene expression analysis of R. conorii [213]; B = gene expression analysis of R. prowazekii [214]; C = gene expression analysis of R. typhi [215]; D = bacterial two-hybrid screen of R. sibirica [74]; E = proteome analysis of R. felis [216]; Fa = PhoA fusion analysis of R. typhi [99]; Fb = gene expression analysis of PhoA fusion positive proteins of R. typhi [99]; G = proteome analysis of R. prowazekii str. Madrd E [217]; H = Differential translation analysis between R. prowazekii strains Madrid E and Breinl [218].