TABLE 6.
Gene |
P value by cladea
|
Repeat no. for isolates in:
|
|||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Clade 1
|
Clade 2
|
Clade 3
|
Clade 4
|
||||||||||||
Single alleles | Mean allele | Range | Median | Mode | Range | Median | Mode | Range | Median | Mode | Range | Median | Mode | ||
ALS1 | 0.062 | 0.95 | 9-19 | 14 | 14 | 2-19 | 12.5 | 2 | 11-16 | 13 | 13 | 11-22 | 14 | 13 | |
ALS2 | <0.001 | 0.22 | 10-48 | 39 | 39 | 14-30 | 27 | 27 | 25-30 | 30 | 30 | 11-48 | 34 | 39 | |
ALS3 | 0.078 | 0.016 | 8-17 | 10 | 10 | 8-17 | 13 | 13 | 9-13 | 10.5 | 13 | 10-15 | 11 | 11 | |
ALS4 | 0.01 | 0.90 | 8-39 | 25 | 25 | 14-34 | 19 | 14 | 22-34 | 29 | 29 | 13-39 | 29 | 29 | |
ALS5 | 0.002 | 0.071 | 4-5 | 4 | 4 | 4-10 | 6 | 4 | 4-4 | 4 | 4 | 4-8 | 4 | 4 | |
ALS6 | <0.001 | 0.101 | 3-4 | 4 | 4 | 3-4 | 3 | 3 | 3-4 | 3 | 3 | 4-9 | 8 | 8 | |
ALS7 | <0.001 | 0.27 | 3-26 | 16 | 16 | 3-7 | 4 | 4 | 3-16 | 3 | 3 | 9-27 | 25 | 26 | |
ALS9 | 0.007 | 0.44 | 10-20 | 10 | 10 | 11-23 | 13 | 13 | 11-15 | 11.5 | 11 | 7-18 | 11 | 11 | |
HYR1 | <0.001 | 0.22 | 21-25 | 23 | 22 | 21-23 | 23 | 23 | 21-23 | 22 | 23 | 16-25 | 25 | 25 | |
HYR3 | |||||||||||||||
First repeat | <0.001 | 0.018 | 2-4 | 2 | 2 | 2-4 | 2 | 2 | 4-4 | 4 | 4 | 2-4 | 4 | 4 | |
Second repeat | <0.001 | 0.031 | 21-22 | 22 | 22 | 22-22 | 22 | 22 | 20-21 | 20 | 20 | 21-21 | 21 | 21 |
Outcome of Kruskall-Wallis test for association between midrepeat numbers and clade, applied to all alleles from all isolates represented separately (single alleles column) or to the average allele size for each (diploid) isolate.