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. 2009 Mar 20;5(3):e1000432. doi: 10.1371/journal.pgen.1000432

Table 1. Top SNPs selected by Evaporative Cooling (EC) as most relevant to smallpox vaccine-associated adverse events.

SNP ID dbSNP ids Gene Name EC Score
ESR1-13 56525559 estrogen receptor 1 −1.551
HSD17B4-19 21184487 hydroxysteroid (17-beta) dehydrogenase 4 −1.422
GSK3B-01 26231979 glycogen synthase kinase 3 beta −1.174
GSK3B-27 26255314 glycogen synthase kinase 3 beta −1.167
CASR-06 28496245 calcium-sensing receptor −0.727
ALOX5-15 3320405 arachidonate 5-lipoxygenase −0.701
RXRA-03 208756 retinoid X receptor, alpha −0.633
AHR-17 16862729 aryl hydrocarbon receptor −0.627
CD4-03 6783008 CD4 molecule −0.605
SCUBE2-02 7859381 signal peptide, CUB domain, EGF-like 2 −0.597
ARNT-23 1340390 aryl hydrocarbon receptor nuclear translocator −0.562
LIPC-08 29629829 lipase, hepatic −0.561
OPRD1-03 11986807 opioid receptor, delta 1 −0.538
GSK3B-04 26074026 glycogen synthase kinase 3 beta −0.493
MTHFR-02 1801133 5,10-methylenetetrahydrofolate reductase (NADPH) −0.487
GSK3B-07 26090649 glycogen synthase kinase 3 beta −0.483
EXO1-02 6787940 exonuclease 1 −0.480
MTHFR-02-2 6393745 5,10-methylenetetrahydrofolate reductase (NADPH) −0.478
SLC6A3-14 1419969 solute carrier family 6 (neurotransmitter transporter, dopamine), member 3 −0.476
CYBB-12 488277 cytochrome b-245, beta polypeptide −0.390
IL4-01 34424167 interleukin 4 −0.366
NFKB1-14 28084004 nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 −0.321
IL4-03 34424723 interleukin 4 −0.312
CBR3-01 23169639 carbonyl reductase 3 −0.302
IL2-03 47925629 interleukin 2 −0.288
IL4-10 34433182 interleukin 4 −0.238

The EC score cutoff was selected by random permutation analysis, yielding a .05 risk that a SNP declared relevant on this list is actually irrelevant to the phenotype. SNPs sorted from best to worst EC score; a lower score means more relevance to the phenotype. SNPs are named according to their SNP500Cancer id (http://snp500cancer.nci.nih.gov/) in the first column and by dbSNP number (build 129) in the second column.