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. 2009 Mar 13;4(3):e4761. doi: 10.1371/journal.pone.0004761

Figure 5. Results KeyPoint analysis tomato natural population EU-SOL core collection.

Figure 5

A) Results KeyPoint analysis tomato natural population EU-SOL core collection. The top panel shows numbers of all sequence deviations compared to the wild type sequence observed in each of the 2D pools at a selected subset of nucleotide positions of the SleIF4E amplicon 2. The total number of observed sequence deviations and calculated average error rates are shown at the right hand side. The bottom panel shows the corresponding P values for each of the X and Y pools. Total numbers of pools surpassing significance thresholds P<0.001, P<0.01 and P<0.05 are shown at the bottom right. The complete analysis of all nucleotide positions of amplicons 1, 2 and 3 is shown in figure S5a, S5b and S5c, respectively. B) SNPs and haplotypes of the SleIF4E gene observed in 92 lines of the EU-SOL tomato core collection. Haplotype 1 is wild type (WT) sequence. Alleles different from WT are shown in grey. Nucleotide positions in amplicons 1, 2 and 3 are shown at the top. 96-well plate row (A–H) and column (1–12) positions containing samples carrying haplotypes are shown in the “origin” column.