Table 3.
NMAT Complex | Apo | NaMN bound | NaAD bound |
---|---|---|---|
Data Collection | |||
Space Group | P61 | P61 | C2221 |
Unit Cell dimensions: | |||
a, b, c (Å) | a=b=97.026, c=85.095 | a=b=95.895, c=84.532 | 142.87, 103.07, 91.73 |
Resolution (Å) | 2.5 | 2.6 | 1.75 |
No. reflection recorded | 92,086 | 74,602 | 277,908 |
No. averaged reflections | 14,956 | 13,586 | 68,050 |
Rmerge (%) | 8.3(45.8) | 8.2(65.1) | 5.3(35.0) |
I/σI | 25.7(2.6) | 27.6(2.7) | 37.8(2.3) |
% Completenessa | 94.7(93.1) | 99.8(98.3) | 97.6(83.9) |
Refinement | |||
Resolution Range | 20.0 – 2.5 | 20.0 – 2.6 | 20.0 – 1.75 |
No. Reflections in Working Set | 14,226 | 12,955 | 64,585 |
No. Reflections in Test Set | 735 | 658 | 3,465 |
Rcryst (%)b | 21 | 20.4 | 21.9 |
Rfree (%)c | 26.2 | 28.4 | 25.7 |
Figure of meritd | 0.792 | 0.774 | 0.804 |
Average B-factor (Å2) | 44 | 51.4 | 32.9 |
No. water molecules | 125 | 130 | 417 |
No. glycerol molecules | 4 | 6 | 0 |
No. NaMN molecules | 0 | 1 | 0 |
No. Co2+ molecules | 2 | 2 | 0 |
No. NaAD molecules | 0 | 0 | 3 |
No. sulfate molecules | 0 | 0 | 4 |
RMSD from ideal geometry: | |||
Bond Lengths (Å) | 0.009 | 0.011 | 0.010 |
Bond Angles (degrees) | 1.47 | 1.5 | 1.43 |
Dihedral angles (degrees) | 23.4 | 23.2 | 22.6 |
Improper angles (degrees) | 1.02 | 1.06 | 2.7 |
Ramachandran Plot | |||
Most Favored (%) | 97.9 | 98.8 | 100 |
Allowed (%) | 1.5 | 0.6 | 0 |
Disallowed (%) | 0.6 | 0.6 | 0 |
Completeness for I/σ(I) >1.0, high-resolution shell in parentheses.
Rcryst = Σ || Fo |−|Fc ||/Σ| Fo |
Rfree was calculated against 5% of the reflections removed at random
Figure of merit = (| ΣP (α)eiα/ΣP (α) |), where α is the phase and P(α) is the phase probability distribution