Table 4.
Overall RMSD Comparisions. Values are in Ångstroms (Å)
| Apo Structure | NaMN-Bound Structure | NaAD-Bound Structure | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Chain A | Chain B | Dimer | Chain A | Chain B | Dimer | Chain A | Chain B | Chain C | Dimer | ||
| Apo Structure | Chain A | X | 0.603 (184) | 0.596 (185) | 0.652 (186) | 1.127 (175) | 0.998 (175) | 1.148 (175) | |||
| Chain B | 0.603 (184) | X | 0.605 (188) | 0.667 (188) | 0.974 (174) | 0.832 (174) | 1.025 (175) | ||||
| Dimer | X | 0.583 (374) | 2.074 (353) | ||||||||
| NaMN-Bound Structure | Chain A | 0.596 (185) | 0.605 (188) | X | 0.772 (186) | 1.134 (175) | 1.00 (175) | 1.094 (174) | |||
| Chain B | 0.652 (186) | 0.667 (188) | 0.772 (186) | X | 1.076 (178) | 0.810 (175) | 0.912 (174) | ||||
| Dimer | 0.583 (374) | X | 2.054 (350) | ||||||||
| NaAD-Bound Structure | Chain A | 1.127 (175) | 0.974 (174) | 1.134 (175) | 1.076 (178) | X | 0.505 (185) | 0.347 (188) | |||
| Chain B | 0.998 (175) | 0.832 (174) | 1.00 (175) | 0.810 (175) | X | 0.499 (185) | |||||
| Chain C | 1.148 (175) | 1.025 (175) | 1.094 (174) | 0.912 (174) | X | ||||||
| Dimer | 2.074 (353) | 2.054 (350) | X | ||||||||
Boxes marked with an X implies there is no RMSD associated with the two chains.
Values in parentheses indicate the number of residues used in the comparision.
Secondary structure matching (SSM) was used in the program Superpose to make pairwise aligments of the NMAT crystal structures.