Table 3.

Bayesian models, their name in the contributed paper, assumptions on SNP effects and polygenic effects.

Model	Model [reference]	SNP effect	Polygenic effect	Number of QTL assumed apriori
GPBayes1	HAP_POL [16]	IBD	+	30
GPBayes2	HAP_NOPOL [16]	IBD	-	30
GPBayes3	SNP_POL [16]	Single SNP	+	30
GPBayes4	SNP_NOPOL [16]	Single SNP	-	30
GPBayes5	Scenario11 [17]	5 SNP haplotype	-	12