Figure 11. Example of three domains that violate transitivity with
.
They are joined after the cross-over point in the network built using similarity threshold . The ASTRAL codes are d1mt5a_ (a), d1bif_1 (b) and 1b3qa1 (c). The bigger domain d1mt5a_ (red) links in the network the two smaller domains, which deviate considerably from each other as they don't share any significant part of structure between them. It holds
(red and blue),
(red and green) and
(blue and green), which violates transitivity.