Skip to main content
. 2009 Mar 27;5(3):e1000331. doi: 10.1371/journal.pcbi.1000331

Figure 11. Example of three domains that violate transitivity with Inline graphic.

Figure 11

They are joined after the cross-over point in the network built using similarity threshold Inline graphic. The ASTRAL codes are d1mt5a_ (a), d1bif_1 (b) and 1b3qa1 (c). The bigger domain d1mt5a_ (red) links in the network the two smaller domains, which deviate considerably from each other as they don't share any significant part of structure between them. It holds Inline graphic (red and blue), Inline graphic (red and green) and Inline graphic (blue and green), which violates transitivity.