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. 2009 Mar 27;5(3):e1000331. doi: 10.1371/journal.pcbi.1000331

Figure 12. For networks defined through the condition Inline graphic, with Inline graphic and Inline graphic, respectively, and for all triangles that violate the transitive property, i.e., Inline graphic, Inline graphic and Inline graphic, we measured the overlap Inline graphic between the two relevant matches of the intermediate structure Inline graphic, Eq. (4).

Figure 12

The peaks of the distribution at Inline graphic and Inline graphic correspond to matches over completely different and exactly the same region of protein Inline graphic, respectively.