Table 9.
CASP7 results, [12, 23] residue separation
| template ID | [0,10)% | [10,20)% | [20,30)% | [30,40)% | [40,50)% | [50,60)% | [60,70)% | [70,80)% | All |
| proteins | 29 | 29 | 16 | 4 | 7 | 4 | 3 | 1 | 93 |
| positive pairs | 3676 | 2336 | 3006 | 818 | 800 | 804 | 268 | 176 | 11884 |
| negative pairs | 117104 | 95092 | 84186 | 27010 | 26008 | 25896 | 7484 | 6148 | 388928 |
| SAM_T06 | 13.6% | 11.7% | 18.1% | 21.5% | 16.7% | 15.1% | 12.7% | 12.2% | 14.6% |
| Betapro | 18.5% | 18.3% | 24.4% | 34.3% | 20.4% | 17.6% | 25.9% | 10.6% | 21.4% |
| ProfCon | 26.3% | 26.3% | 25.2% | 29.9% | 25.8% | 26.0% | 27.5% | 28.3% | 26.3% |
| Possum | 14.8% | 18.3% | 24.0% | 19.6% | 18.1% | 5.7% | 15.3% | 18.2% | 17.8% |
| SVMcon | 22.1% | 22.3% | 20.8% | 21.5% | 23.1% | 22.0% | 20.0% | 40.8% | 22.2% |
| 8AI | 25.9% | 25.8% | 25.7% | 40.7% | 34.8% | 35.6% | 31.0% | 47.3% | 28.5% |
| 8TE | 24.0% | 40.2% | 64.9% | 82.8% | 76.9% | 91.3% | 91.8% | 86.5% | 52.6% |
Results for the CASP7 targets: sequence separations of 12 to 23 residues, inclusive. Comparison between our two predictors (8AI and 8TE) and the predictors ranked highest at CASP7. We report F1 for the contact class, as a function of sequence similarity to the best PSI-BLAST template. Predictions are from the CASP7 web site. ProfCon is in italics because it predicted 73 out of 93 maps, hence its results are not exactly comparable. In bold is the highest F1 of all predictors, excluding ProfCon, and excluding 8TE, which uses templates and has the highest F1 in all ranges except [0,10)% where it is slightly worse than only 8AI.