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. 2008 Dec 1;9:511. doi: 10.1186/1471-2105-9-511

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Copyright © 2008 Oscamou et al; licensee BioMed Central Ltd.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Results considering all matrices. Results for accuracy (left column) and speed (right column) for the different methods (legend in panel a) under different simulation conditions. Error is measured as the mean Euclidean distance between the matrix used to generate the sequences and the inferred matrix (arbitrary units); time is measured in seconds. Figures show effects of DNA length (a, b), branch ratio (c, d) and branch inner length (e, f) on accuracy and speed. The effect of whether the inner branches evolved according to the same or different matrices was negligible, and is not shown.