Table 4.

Summary of the M. maripaludis proteome by Oak Ridge Functional Class

OFCa	OFC Descriptionb	DBc	S40 onlyd	S2 onlye	S40 and S2f	S40, S2 Totalg	Mmp Totalh
0	hypothetical	145	6	4	24	34	59
2	replication and repair	36	2	3	14	19	28
3	energy metabolism	86	4	3	54	61	73
4	carbohydrate metabolism	42	2	2	25	29	38
5	lipid metabolism	8	0	2	3	5	6
6	transcription	41	0	2	25	27	36
7	translation	121	1	2	101	104	120
9	cellular processes	33	2	1	21	24	28
10	amino acid metabolism	86	2	7	64	73	84
12	metabolism of cofactors	68	6	14	24	44	58
13	conserved hypothetical	658	28	50	232	310	461
14	transport	82	5	5	17	27	50
15	signal transduction	7	1	0	4	5	7
16	nucleotide metabolism	43	1	3	31	35	40
1, 11	other	266	8	22	123	153	201
	Total	1722	68	120	762	950	1289

^aOak Ridge Functional Class Number, see http://genome.ornl.gov/microbial/mmar.

^bText descriptor for each OFC as defined by ORNL.

^cDatabase of protein-encoding ORFs derived from the genome annotation (2).

^dDetected qualitatively only in S40 in the S40/S2 comparison experiment (complete data in supplemental Table S2).

^eDetected qualitatively only in S2 in the S40/S2 comparison experiment.

^fDetected qualitatively in both S2 and S40 in the S40/S2 comparison experiment.

^gTotal qualitatively detected proteins in the S40/S2 comparison experiment.

^hTotal qualitatively detected proteins from all samples listed in supplemental Table S3.