TABLE 2.
Primers used for epPCR, DNA sequencing, RT-PCR, and confirmation of the double mutants
| Purpose | Primer | Sequence |
|---|---|---|
| epPCR of SdiA | SdiA front | 5′-AGGCGTATCACGAGGCCCTTTC-3′ |
| SdiA reverse | 5′-CAGTCACGATGAATTCCCCTAG-3′ | |
| DNA sequencing | Seq primer 1 | 5′-CACCGATCGCCCTTCCCAACAGTTGC-3′ |
| Seq primer 2 | 5′-GCAGTTACTGGTGCGCGAAAG-3′ | |
| RT-PCR for tnaA and housekeeping | TnaA front | 5′-TGAAGAAGTTGGTCCGAATAACGTG-3′ |
| gene rrsG | TnaA reverse | 5′-CTTTGTATTCTGCTTCACGCTGCTT-3′ |
| RrsG front | 5′-TATTGCACAATGGGCGCAAG-3′ | |
| RrsG reverse | 5′-ACTTAACAAACCGCCTGCGT-3′ | |
| Confirmation of the sdiA mutation | SdiA up | 5′-AATGCGATGGCTTGCAAAAGTAATT-3′ |
| SdiA down | 5′-AGCAAATTAAACAAGCCTACCGTCA-3′ | |
| Confirmation of the tnaA mutation | TnaA up | 5′-CTGGCGAATTAATCGGTATAGCAGA-3′ |
| TnaA down | 5′-GATCAGTCATGATGCCACCTTTAGA-3′ | |
| Confirmation of the mtr mutation | Mtr up | 5′-GTACTCGTGTACTGGTACAGTGCAA-3′ |
| Mtr down | 5′-TCCTACATAGACCTGATAAGCGAAG-3′ |