TABLE 2.
Primers used for epPCR, DNA sequencing, RT-PCR, and confirmation of the double mutants
Purpose | Primer | Sequence |
---|---|---|
epPCR of SdiA | SdiA front | 5′-AGGCGTATCACGAGGCCCTTTC-3′ |
SdiA reverse | 5′-CAGTCACGATGAATTCCCCTAG-3′ | |
DNA sequencing | Seq primer 1 | 5′-CACCGATCGCCCTTCCCAACAGTTGC-3′ |
Seq primer 2 | 5′-GCAGTTACTGGTGCGCGAAAG-3′ | |
RT-PCR for tnaA and housekeeping | TnaA front | 5′-TGAAGAAGTTGGTCCGAATAACGTG-3′ |
gene rrsG | TnaA reverse | 5′-CTTTGTATTCTGCTTCACGCTGCTT-3′ |
RrsG front | 5′-TATTGCACAATGGGCGCAAG-3′ | |
RrsG reverse | 5′-ACTTAACAAACCGCCTGCGT-3′ | |
Confirmation of the sdiA mutation | SdiA up | 5′-AATGCGATGGCTTGCAAAAGTAATT-3′ |
SdiA down | 5′-AGCAAATTAAACAAGCCTACCGTCA-3′ | |
Confirmation of the tnaA mutation | TnaA up | 5′-CTGGCGAATTAATCGGTATAGCAGA-3′ |
TnaA down | 5′-GATCAGTCATGATGCCACCTTTAGA-3′ | |
Confirmation of the mtr mutation | Mtr up | 5′-GTACTCGTGTACTGGTACAGTGCAA-3′ |
Mtr down | 5′-TCCTACATAGACCTGATAAGCGAAG-3′ |