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. 2009 Jan 23;75(6):1703–1716. doi: 10.1128/AEM.02081-08

TABLE 2.

Primers used for epPCR, DNA sequencing, RT-PCR, and confirmation of the double mutants

Purpose Primer Sequence
epPCR of SdiA SdiA front 5′-AGGCGTATCACGAGGCCCTTTC-3′
SdiA reverse 5′-CAGTCACGATGAATTCCCCTAG-3′
DNA sequencing Seq primer 1 5′-CACCGATCGCCCTTCCCAACAGTTGC-3′
Seq primer 2 5′-GCAGTTACTGGTGCGCGAAAG-3′
RT-PCR for tnaA and housekeeping TnaA front 5′-TGAAGAAGTTGGTCCGAATAACGTG-3′
    gene rrsG TnaA reverse 5′-CTTTGTATTCTGCTTCACGCTGCTT-3′
RrsG front 5′-TATTGCACAATGGGCGCAAG-3′
RrsG reverse 5′-ACTTAACAAACCGCCTGCGT-3′
Confirmation of the sdiA mutation SdiA up 5′-AATGCGATGGCTTGCAAAAGTAATT-3′
SdiA down 5′-AGCAAATTAAACAAGCCTACCGTCA-3′
Confirmation of the tnaA mutation TnaA up 5′-CTGGCGAATTAATCGGTATAGCAGA-3′
TnaA down 5′-GATCAGTCATGATGCCACCTTTAGA-3′
Confirmation of the mtr mutation Mtr up 5′-GTACTCGTGTACTGGTACAGTGCAA-3′
Mtr down 5′-TCCTACATAGACCTGATAAGCGAAG-3′