TABLE 3.
Biotype | Origin | n | % with genotypea:
|
% with genotypic profileb:
|
|||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
vcg type C | vcg type E | vvh type 1 | vvh type 2 | rRNA type A | rRNA type B | rRNA type AB | 1 | 2 | 3 | Atypical | |||
1 | Water | 19 | 21 | 79 | 26 | 74 | 68 | 26 | 5 | 21 | 63 | 0 | 16 |
Oyster | 8 | 75 | 25 | 87 | 13 | 13 | 87 | 0 | 75 | 0 | 0 | 25 | |
Fish | 6 | 0 | 100 | 17 | 83 | 83 | 17 | 0 | 0 | 83 | 0 | 17 | |
Human blood | 12 | 83 | 17 | 83 | 17 | 17 | 83 | 0 | 75 | 8 | 0 | 16 | |
Human (not blood) | 4 | 0 | 100 | 0 | 100 | 50 | 50 | 0 | 0 | 50 | 0 | 50 | |
2 | Water | 10 | 0 | 100 | 0 | 100 | 100 | 0 | 0 | 0 | 100 | 0 | 0 |
Healthy fish | 2 | 0 | 100 | 0 | 100 | 100 | 0 | 0 | 0 | 100 | 0 | 0 | |
Diseased fish | 38 | 0 | 100 | 0 | 100 | 100 | 0 | 0 | 0 | 100 | 0 | 0 | |
Diseased shrimp | 1 | 0 | 100 | 0 | 100 | 100 | 0 | 0 | 0 | 100 | 0 | 0 | |
Human blood | 2 | 0 | 100 | 0 | 100 | 100 | 0 | 0 | 0 | 100 | 0 | 0 | |
Human (not blood) | 2 | 0 | 100 | 0 | 100 | 100 | 0 | 0 | 0 | 100 | 0 | 0 | |
3 | Bacteremia | 5 | 0 | 100 | 100 | 0 | 0 | 0 | 100 | 0 | 0 | 100 | 0 |
Percentage of isolates with positive PCR results.
Percentage of isolates with each profile. See the text for a description of the profiles.