Table 2.
Melting temperatures in °C for modified versus non-modified duplexes
Complementary base | 2*A | 2*C | 2*T | 2*G |
---|---|---|---|---|
10 5′-CTGACG A2ATGC-3′ | 30.9 (−17.2) | 24.0 (−28.0) | 30.0 (–19.7) | 29.3 (−24.1) |
11 5′-CTGACG G2GTGC-3′ | 40.1 (−16.6) | 39.6 (−19.7) | 36.1 (−17.0) | 38.9 (−23.5) |
12 5′-CTGACG C2C TGC-3′ | 30.5 (−23.2) | 24.9 (−36.7) | 32.5 (−23.8) | 32.4 (−26.3) |
13 5′-CTGACG T2T TGC-3′ | 29.2 (−20.5) | 23.1 (−30.4) | 27.3 (−19.9) | 26.5 (−25.2) |
Melting curves were recorded at 260 nm with a heating rate of 0.3°C/min. Oligonucleotide concentrations were 2 μM of each strand in 100 mM NaCl and 10 mM phosphate buffer at pH. Values between parentheses refer to destabilization with respect to unmodified duplexes.