Table 4.
RNAz screens of T. adhaerens genome
| multiz | NcDNalign | Known | |
|---|---|---|---|
| Aligned DNA (nt) | 4 837 148 | 1 35 140 | – |
| alignments | 35 039 | 744 | – |
| RNAz P > 0.5 | 1416 | 101 | – |
| FDR random | 56% (797) | 43% (43) | – |
| RNAz P > 0.9 | 751 | 79 | – |
| FDR | 27% (386) | 15% (15) | – |
| tRNAs | 39 | 35 | 50+1 |
| 5S rRNA | 6 | 8 | 9 |
| rRNA operon | 33+3 | 43 | –a |
| snRNAs | 6 | 4 | 10 |
| MRP, P, 7SL | 1 | 0 | 3 |
| Protein coding | 1022 | 11 | 96 963 |
| Repeat elements | 66 | 1 | – |
| Total annotated | 1211 | 101 | – |
| Unannotated with EST | 12 | 0 | – |
| Without annotation | 205 | 0 | – |
aThe rDNA operons appear as series of multiple RNAz hits. Known refers to all ncRNAs that have been reported previously and those that have been identified by homology search in this study.