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. 2009 Jan 16;37(5):1566–1579. doi: 10.1093/nar/gkn1064

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© 2009 The Author(s)

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 3. — Results of Allegro on the yeast HOG pathway expression dataset (14). Allegro finds the motifs PAC, RRPE, STRE and the binding patterns of Rap1, MBF, Ste12 and Sko1. Each motif is presented together with the average expression profile (±1 SD) of its CWM targets which contain a hit for the motif in their promoter. The titles above the expression series indicate the yeast strain the expression was sampled from: WT, and knockout strains [indicated by the name(s) of the gene(s) that were knocked-out]. The concentrations of KCL and sorbitol are given in molar units.